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The map label for this gene is dapB

Identifier: 116515033

GI number: 116515033

Start: 103047

End: 103868

Strand: Reverse

Name: dapB

Synonym: BCc_092

Alternate gene names: 116515033

Gene position: 103868-103047 (Counterclockwise)

Preceding gene: 116515034

Following gene: 116515032

Centisome position: 24.95

GC content: 19.46

Gene sequence:

>822_bases
ATGAAAAATAAAACTAAAATTATAATATCAGGTGCTTTAGGCAGAATGGGAAAAATACTAATAAAAGAAACAAAAAAAAA
TAAATTAATTAAATTAGTATATGCATTAATTAATAATAATATAGATATTAAAAATCATAATCAATTTTATAAAGTTAAAG
AAAAAAAAAAATTTATAACACTAAATAATCTTAAAAAAAAAAAAAAAATATTAAAATTTGATACTATAATTGATTTTAGT
TCACCTAAATATTCTATAAAAATAATAAAATATTGTTTAAAAAACAATAAAAAAATAGTATTAGGAACTACAGGTTTTAA
TACCGAACAAATTAAAATAATAAATAATGCTTCTAAAAAAATACCAATTATATATTCACCTAATTTCAGCATAGGAATTA
ATATTATCTATAAAATACTAAAAAATATTTCAAAAATTTTAGGAAAAAATTCGGATATTGAAATTATTGAATCTCATCAT
AGAAATAAAATAGATGCTCCTTCAGGAACAGCTTTACAATTAGGAAAAATAATTTCTAAATCCATGAAATGGAATTTTAA
AAAATCAGCTATTTTTTCAAGGTATGGAAATATTGGAATAAGAAAAAAAAAAAGAATTGGATTTTCAACTATTCGAGAAG
GTAATACTATAGGCGAACACACAGTTCTTTTCTCTAATAAATATGAAAAAATTTCAATATTTCATAAAGCTATACATCGT
TCTGTATTTGCTAAAGGAGCTTTAAAAGCAGCAATTTGGATATCAAGAAAAAAAAATGGTTTATATAATATGTCAGATAT
GCTAAAAAAAATTAAAATATAA

Upstream 100 bases:

>100_bases
TATAATATAATTTGTATTATATTTATAATAACTTAAAATATTATATTCTTTAAAAATTTGTATATAAACAATATTAAAAT
TATTTGAGAAAATATATTCT

Downstream 100 bases:

>100_bases
AAAAGAATACATATTCTATATTATAAAATAATATACATTCTTAATATTAATAATTTTTTATAAAATAAATTAGGAAAAAA
TTTTGACAAAATTAGCGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: DHPR

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKNKTKIIISGALGRMGKILIKETKKNKLIKLVYALINNNIDIKNHNQFYKVKEKKKFITLNNLKKKKKILKFDTIIDFS
SPKYSIKIIKYCLKNNKKIVLGTTGFNTEQIKIINNASKKIPIIYSPNFSIGINIIYKILKNISKILGKNSDIEIIESHH
RNKIDAPSGTALQLGKIISKSMKWNFKKSAIFSRYGNIGIRKKKRIGFSTIREGNTIGEHTVLFSNKYEKISIFHKAIHR
SVFAKGALKAAIWISRKKNGLYNMSDMLKKIKI

Sequences:

>Translated_273_residues
MKNKTKIIISGALGRMGKILIKETKKNKLIKLVYALINNNIDIKNHNQFYKVKEKKKFITLNNLKKKKKILKFDTIIDFS
SPKYSIKIIKYCLKNNKKIVLGTTGFNTEQIKIINNASKKIPIIYSPNFSIGINIIYKILKNISKILGKNSDIEIIESHH
RNKIDAPSGTALQLGKIISKSMKWNFKKSAIFSRYGNIGIRKKKRIGFSTIREGNTIGEHTVLFSNKYEKISIFHKAIHR
SVFAKGALKAAIWISRKKNGLYNMSDMLKKIKI
>Mature_273_residues
MKNKTKIIISGALGRMGKILIKETKKNKLIKLVYALINNNIDIKNHNQFYKVKEKKKFITLNNLKKKKKILKFDTIIDFS
SPKYSIKIIKYCLKNNKKIVLGTTGFNTEQIKIINNASKKIPIIYSPNFSIGINIIYKILKNISKILGKNSDIEIIESHH
RNKIDAPSGTALQLGKIISKSMKWNFKKSAIFSRYGNIGIRKKKRIGFSTIREGNTIGEHTVLFSNKYEKISIFHKAIHR
SVFAKGALKAAIWISRKKNGLYNMSDMLKKIKI

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family

Homologues:

Organism=Escherichia coli, GI1786214, Length=265, Percent_Identity=37.7358490566038, Blast_Score=210, Evalue=6e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPB_BUCCC (Q057Y0)

Other databases:

- EMBL:   CP000263
- RefSeq:   YP_802662.1
- ProteinModelPortal:   Q057Y0
- SMR:   Q057Y0
- STRING:   Q057Y0
- EnsemblBacteria:   EBBUCT00000001262
- GeneID:   4440637
- GenomeReviews:   CP000263_GR
- KEGG:   bcc:BCc_092
- eggNOG:   COG0289
- GeneTree:   EBGT00050000007836
- HOGENOM:   HBG594002
- OMA:   GRMGKTL
- BioCyc:   BAPH372461:BCC_092-MONOMER
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00102
- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR20836
- TIGRFAMs:   TIGR00036

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N

EC number: =1.3.1.26

Molecular weight: Translated: 31312; Mature: 31312

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKTKIIISGALGRMGKILIKETKKNKLIKLVYALINNNIDIKNHNQFYKVKEKKKFIT
CCCCEEEEEECCCCHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEE
LNNLKKKKKILKFDTIIDFSSPKYSIKIIKYCLKNNKKIVLGTTGFNTEQIKIINNASKK
HHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCE
IPIIYSPNFSIGINIIYKILKNISKILGKNSDIEIIESHHRNKIDAPSGTALQLGKIISK
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
SMKWNFKKSAIFSRYGNIGIRKKKRIGFSTIREGNTIGEHTVLFSNKYEKISIFHKAIHR
HHCCCCHHHHHHHHHCCCCCEEHHCCCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH
SVFAKGALKAAIWISRKKNGLYNMSDMLKKIKI
HHHHHHHHHEEEEEEECCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MKNKTKIIISGALGRMGKILIKETKKNKLIKLVYALINNNIDIKNHNQFYKVKEKKKFIT
CCCCEEEEEECCCCHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEE
LNNLKKKKKILKFDTIIDFSSPKYSIKIIKYCLKNNKKIVLGTTGFNTEQIKIINNASKK
HHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECCCCE
IPIIYSPNFSIGINIIYKILKNISKILGKNSDIEIIESHHRNKIDAPSGTALQLGKIISK
EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHH
SMKWNFKKSAIFSRYGNIGIRKKKRIGFSTIREGNTIGEHTVLFSNKYEKISIFHKAIHR
HHCCCCHHHHHHHHHCCCCCEEHHCCCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHH
SVFAKGALKAAIWISRKKNGLYNMSDMLKKIKI
HHHHHHHHHEEEEEEECCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA