Definition | Buchnera aphidicola str. Cc (Cinara cedri), complete genome. |
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Accession | NC_008513 |
Length | 416,380 |
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The map label for this gene is hisD [H]
Identifier: 116515006
GI number: 116515006
Start: 71094
End: 72389
Strand: Direct
Name: hisD [H]
Synonym: BCc_064
Alternate gene names: 116515006
Gene position: 71094-72389 (Clockwise)
Preceding gene: 116515005
Following gene: 116515007
Centisome position: 17.07
GC content: 25.15
Gene sequence:
>1296_bases ATGTTGAATATAAATAAAAATATTTTTTACTGGAATATATTAACTAAAAAAGAAAAAATTCATGTATTATCTCGACCTCA TATCAATAGTAATAAAAATATTAAAGAATTAGTTTTTAAAATTATAGATAATGTTAAAAAACATGGAGATTTAGCTTTAC ATTCATATAATTTAGAATTTGATAATTTTAAATGTAAAAGTTTTTATATTTCTAGAAAAAAAATTGACAATTCTTCTAAT TTAGTATCTAAAAAATTTAAAGATGCTATTTCTATTGCTTTAAGTAATATTAATAATTTTCATTCTAAACAAATTCTTTC AGATTTAATTGTAGAAACATATCCCGGAGTATATTGTAAACATATATATAGACCAATTCAGTCAGTAGGATTATATGTAC CTAAAGGAAATCATCCATTAGTTTCTACTGCGTTAATGTTATCTATTCCAGCAAAATTAGCTGGTTGTCATAATATTACA TTATGTTCTCCGCCTCCTATTAGTAATGAAATTTTATATATTGCTAAGATATTAAAAATTTATACTGTTCTTCAATTGGG AGGAGCTCATTCTATTGCTGCATTAGCATTAGGTACTGAGACAGTAAAATTTGTAGATAAAATTTTTGGACCGGGTAATA TTTTTGTTACAGAAGCTAAATTACAAGTTAGTCAATGTTCGTTAACATCTATTGATATGCCTGCAGGCCCTTCTGAAATG TTAGTAATTGCAGATGATTTATCAAATCCTGCTTTTATTGCTTCAGATTTGCTTTCTCAAGCTGAACACAGTCAAAATTC ACAAGTAATCTTATTGTGTACAAAAAATTTTATAGTTAAAAATGTTATTAAAGAAATTCAAAAACAATTATTATTAATAC CTAACAAAAACATTATTTTACATTCTTTAAAAAATAGTAGATTTATTGTTGTTAATTCTTTAAAAGAATGTTTTAAAATA TCTAATTTATATTCCCCTGAACATCTTATTCTACATATTAAAAATTCAAAGAATTTTTTGAAATATATTAATAATGCGGG ATCAGTATTTTTAGGAAAGTGGACACCTGGAGCTGCAGGTGATTATATTACAGGAGCCAATCATGTGTTACCCACATATG GATACGCTAACTCTTATTCTTCTTTACGTGTTTCCGACTTTCAGAAAATAATTACAGTACAAAAAATGACTAAAATAGCA TTACAATCATTATCAAAGAGTATTGCAACTTTATCTCTTATGGAAGGAATGAATGCTCATAATCAATCAATAGTAACTAG AATAAAATTTTTATAA
Upstream 100 bases:
>100_bases AGTGAAATAATTTTCTGGGAAACTATGGAACAATTAAAATCTTTAGGAGCTAGTTCTATTTTGGTATTACCAATAGAAAA GATGATGGAATGAAATTATT
Downstream 100 bases:
>100_bases AAATAAAAATTTTATTATGTAAGAGTCACAATAATATGAAAAGATTAATTCCAAAACATATAAGTATTTTAAAACCATAT CAATCAGCACGTCGTATCGG
Product: hypothetical protein
Products: NA
Alternate protein names: HDH [H]
Number of amino acids: Translated: 431; Mature: 431
Protein sequence:
>431_residues MLNINKNIFYWNILTKKEKIHVLSRPHINSNKNIKELVFKIIDNVKKHGDLALHSYNLEFDNFKCKSFYISRKKIDNSSN LVSKKFKDAISIALSNINNFHSKQILSDLIVETYPGVYCKHIYRPIQSVGLYVPKGNHPLVSTALMLSIPAKLAGCHNIT LCSPPPISNEILYIAKILKIYTVLQLGGAHSIAALALGTETVKFVDKIFGPGNIFVTEAKLQVSQCSLTSIDMPAGPSEM LVIADDLSNPAFIASDLLSQAEHSQNSQVILLCTKNFIVKNVIKEIQKQLLLIPNKNIILHSLKNSRFIVVNSLKECFKI SNLYSPEHLILHIKNSKNFLKYINNAGSVFLGKWTPGAAGDYITGANHVLPTYGYANSYSSLRVSDFQKIITVQKMTKIA LQSLSKSIATLSLMEGMNAHNQSIVTRIKFL
Sequences:
>Translated_431_residues MLNINKNIFYWNILTKKEKIHVLSRPHINSNKNIKELVFKIIDNVKKHGDLALHSYNLEFDNFKCKSFYISRKKIDNSSN LVSKKFKDAISIALSNINNFHSKQILSDLIVETYPGVYCKHIYRPIQSVGLYVPKGNHPLVSTALMLSIPAKLAGCHNIT LCSPPPISNEILYIAKILKIYTVLQLGGAHSIAALALGTETVKFVDKIFGPGNIFVTEAKLQVSQCSLTSIDMPAGPSEM LVIADDLSNPAFIASDLLSQAEHSQNSQVILLCTKNFIVKNVIKEIQKQLLLIPNKNIILHSLKNSRFIVVNSLKECFKI SNLYSPEHLILHIKNSKNFLKYINNAGSVFLGKWTPGAAGDYITGANHVLPTYGYANSYSSLRVSDFQKIITVQKMTKIA LQSLSKSIATLSLMEGMNAHNQSIVTRIKFL >Mature_431_residues MLNINKNIFYWNILTKKEKIHVLSRPHINSNKNIKELVFKIIDNVKKHGDLALHSYNLEFDNFKCKSFYISRKKIDNSSN LVSKKFKDAISIALSNINNFHSKQILSDLIVETYPGVYCKHIYRPIQSVGLYVPKGNHPLVSTALMLSIPAKLAGCHNIT LCSPPPISNEILYIAKILKIYTVLQLGGAHSIAALALGTETVKFVDKIFGPGNIFVTEAKLQVSQCSLTSIDMPAGPSEM LVIADDLSNPAFIASDLLSQAEHSQNSQVILLCTKNFIVKNVIKEIQKQLLLIPNKNIILHSLKNSRFIVVNSLKECFKI SNLYSPEHLILHIKNSKNFLKYINNAGSVFLGKWTPGAAGDYITGANHVLPTYGYANSYSSLRVSDFQKIITVQKMTKIA LQSLSKSIATLSLMEGMNAHNQSIVTRIKFL
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=426, Percent_Identity=47.887323943662, Blast_Score=442, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6319819, Length=437, Percent_Identity=40.5034324942792, Blast_Score=335, Evalue=9e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 48068; Mature: 48068
Theoretical pI: Translated: 10.09; Mature: 10.09
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNINKNIFYWNILTKKEKIHVLSRPHINSNKNIKELVFKIIDNVKKHGDLALHSYNLEF CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC DNFKCKSFYISRKKIDNSSNLVSKKFKDAISIALSNINNFHSKQILSDLIVETYPGVYCK CCEEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH HIYRPIQSVGLYVPKGNHPLVSTALMLSIPAKLAGCHNITLCSPPPISNEILYIAKILKI HHHHHHHHCEEEECCCCCCHHHHHHHHHCCHHHCCCCEEEECCCCCCCCHHHHHHHHHHH YTVLQLGGAHSIAALALGTETVKFVDKIFGPGNIFVTEAKLQVSQCSLTSIDMPAGPSEM HHHHHCCCCCHHHHHHHCHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEECCCCCCCCCE LVIADDLSNPAFIASDLLSQAEHSQNSQVILLCTKNFIVKNVIKEIQKQLLLIPNKNIIL EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHEEECCCCCEEE HSLKNSRFIVVNSLKECFKISNLYSPEHLILHIKNSKNFLKYINNAGSVFLGKWTPGAAG EECCCCCEEEEHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCCCEEEECCCCCCCC DYITGANHVLPTYGYANSYSSLRVSDFQKIITVQKMTKIALQSLSKSIATLSLMEGMNAH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NQSIVTRIKFL CHHHHHHEECC >Mature Secondary Structure MLNINKNIFYWNILTKKEKIHVLSRPHINSNKNIKELVFKIIDNVKKHGDLALHSYNLEF CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC DNFKCKSFYISRKKIDNSSNLVSKKFKDAISIALSNINNFHSKQILSDLIVETYPGVYCK CCEEEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH HIYRPIQSVGLYVPKGNHPLVSTALMLSIPAKLAGCHNITLCSPPPISNEILYIAKILKI HHHHHHHHCEEEECCCCCCHHHHHHHHHCCHHHCCCCEEEECCCCCCCCHHHHHHHHHHH YTVLQLGGAHSIAALALGTETVKFVDKIFGPGNIFVTEAKLQVSQCSLTSIDMPAGPSEM HHHHHCCCCCHHHHHHHCHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEECCCCCCCCCE LVIADDLSNPAFIASDLLSQAEHSQNSQVILLCTKNFIVKNVIKEIQKQLLLIPNKNIIL EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHEEECCCCCEEE HSLKNSRFIVVNSLKECFKISNLYSPEHLILHIKNSKNFLKYINNAGSVFLGKWTPGAAG EECCCCCEEEEHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHCCCCCEEEECCCCCCCC DYITGANHVLPTYGYANSYSSLRVSDFQKIITVQKMTKIALQSLSKSIATLSLMEGMNAH CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NQSIVTRIKFL CHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10222209; 11206551; 11258796 [H]