| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is yieF [H]
Identifier: 116494147
GI number: 116494147
Start: 583431
End: 584699
Strand: Direct
Name: yieF [H]
Synonym: LSEI_0594
Alternate gene names: 116494147
Gene position: 583431-584699 (Clockwise)
Preceding gene: 116494146
Following gene: 116494148
Centisome position: 20.15
GC content: 39.87
Gene sequence:
>1269_bases ATGAAAATTGTTGCAATTGCAGGAAGTATTGCAGATATATCATACAATCGGCAATTATTAACTTTTATCGCTAGCCACTA TGCTTCACAGATTGACATTGAACTACTGGAAATTAAGAATATACCGATGTTTAATGAAGATAAGGATCAAACTCAAAGTG CAGCTGTCCAATATCTAGTACATAAGATCGAATCAGCTGATGGTGTTATTCTAGCAACTCCCGAGCACAATCATACAACA AGTCCTGCTATGAAAAACGTCATTGAATGGTTGTCTTACAAAGTACATCCGTTAAATCAGAAACCAGTCTTAATAGTTGG TGCTTCTTGGCATACACAGGGTTCCTCAAGAGCTCAACTTGCACTTCGTCAAATTATGGAATCACCCGGCGTTGGGGCTT TGGTTATGCCTAGCGATGAGTTTTTATTAGCTGATGCCAAGAAAGCCTTCGATGAGTTAGGGAACTTGAAAGACTCAAAG ACAATTGCTTTTCTCGACACTGTAATTAACAAGTTTATACGTTGGATTAATGTACTAGACGCACTACAGGAAAAGAAAAA GCAAGAACCTTGGCGTCAAGAGGATCTTGCAGGAAAACATCCTGTCGAAACTTCTATTGATATTGATATATCCGATGATT GGGTGGAAAAGGCAGCTAAACTAGTTAAGGCAACGAGTGGGAATCATTATGTCCAACTGAATCGTGGCGTATTAACAGTT GATCAATTAAATTGGTTCCTTAACACGATGCCTGTAGAGTTAACTTTTATGGATGATAATGATCAATTTATTTATTACAA TCATTTTCTCGATCATGACGCTATGCTCGCACCAAGGGATCCAAAACAGGTTGGCAACACTGCCGATTTAGTTCACCCCA AACGAGCCGTTGAGCACGTTCAACAAGTTATTTGGGCTTTACGTCAGGGGCAAAAAGAGCTTATCGCGATGCCAGTACCT GGAAATAAAATAAACCAAAAGTACATTATGCATTTTTACAAAGCTATGCACGATGCAGACGGACGTTATCGTGGTGTTAA CGAATGGGTCCTGGACATTTGGCCAATTGTCTCTGATTATCTAAGGCGTACTGGACAAAAGCTTATCAAGGATCCCGATA GTAAACCTGATGCAACTACAAGTGCCTCACAAAGTGAACCTCAAAGGGTCTTATCTTCTCGAGTAGAAGGGAAAGACGTA CAAACAATTAATGACATGAAAACTTCAACAGCTGATGCGATCACAGGTGCTTCCGAGACGACTAAATAA
Upstream 100 bases:
>100_bases TCCGTCTTTGTTAAGTTGACCAAACAAATGATTCATTCACAAAAACAAGCTAAAGAACAAACTAAAAACGTCAATTGGCA GGATAACTAGGAGGACAATT
Downstream 100 bases:
>100_bases GCAGTACTGACTTAACTGATAAGAACATCAATCGAATAAAGTTTGGCGCTACGTCAACTGGTATTGAAGAATAAATGGCT CTGCGTCAACTGATGTTGAA
Product: flavoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MKIVAIAGSIADISYNRQLLTFIASHYASQIDIELLEIKNIPMFNEDKDQTQSAAVQYLVHKIESADGVILATPEHNHTT SPAMKNVIEWLSYKVHPLNQKPVLIVGASWHTQGSSRAQLALRQIMESPGVGALVMPSDEFLLADAKKAFDELGNLKDSK TIAFLDTVINKFIRWINVLDALQEKKKQEPWRQEDLAGKHPVETSIDIDISDDWVEKAAKLVKATSGNHYVQLNRGVLTV DQLNWFLNTMPVELTFMDDNDQFIYYNHFLDHDAMLAPRDPKQVGNTADLVHPKRAVEHVQQVIWALRQGQKELIAMPVP GNKINQKYIMHFYKAMHDADGRYRGVNEWVLDIWPIVSDYLRRTGQKLIKDPDSKPDATTSASQSEPQRVLSSRVEGKDV QTINDMKTSTADAITGASETTK
Sequences:
>Translated_422_residues MKIVAIAGSIADISYNRQLLTFIASHYASQIDIELLEIKNIPMFNEDKDQTQSAAVQYLVHKIESADGVILATPEHNHTT SPAMKNVIEWLSYKVHPLNQKPVLIVGASWHTQGSSRAQLALRQIMESPGVGALVMPSDEFLLADAKKAFDELGNLKDSK TIAFLDTVINKFIRWINVLDALQEKKKQEPWRQEDLAGKHPVETSIDIDISDDWVEKAAKLVKATSGNHYVQLNRGVLTV DQLNWFLNTMPVELTFMDDNDQFIYYNHFLDHDAMLAPRDPKQVGNTADLVHPKRAVEHVQQVIWALRQGQKELIAMPVP GNKINQKYIMHFYKAMHDADGRYRGVNEWVLDIWPIVSDYLRRTGQKLIKDPDSKPDATTSASQSEPQRVLSSRVEGKDV QTINDMKTSTADAITGASETTK >Mature_422_residues MKIVAIAGSIADISYNRQLLTFIASHYASQIDIELLEIKNIPMFNEDKDQTQSAAVQYLVHKIESADGVILATPEHNHTT SPAMKNVIEWLSYKVHPLNQKPVLIVGASWHTQGSSRAQLALRQIMESPGVGALVMPSDEFLLADAKKAFDELGNLKDSK TIAFLDTVINKFIRWINVLDALQEKKKQEPWRQEDLAGKHPVETSIDIDISDDWVEKAAKLVKATSGNHYVQLNRGVLTV DQLNWFLNTMPVELTFMDDNDQFIYYNHFLDHDAMLAPRDPKQVGNTADLVHPKRAVEHVQQVIWALRQGQKELIAMPVP GNKINQKYIMHFYKAMHDADGRYRGVNEWVLDIWPIVSDYLRRTGQKLIKDPDSKPDATTSASQSEPQRVLSSRVEGKDV QTINDMKTSTADAITGASETTK
Specific function: Unknown
COG id: COG0431
COG function: function code R; Predicted flavoprotein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family [H]
Homologues:
Organism=Escherichia coli, GI1790149, Length=186, Percent_Identity=30.6451612903226, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 47591; Mature: 47591
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVAIAGSIADISYNRQLLTFIASHYASQIDIELLEIKNIPMFNEDKDQTQSAAVQYLV CEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHH HKIESADGVILATPEHNHTTSPAMKNVIEWLSYKVHPLNQKPVLIVGASWHTQGSSRAQL HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHH ALRQIMESPGVGALVMPSDEFLLADAKKAFDELGNLKDSKTIAFLDTVINKFIRWINVLD HHHHHHHCCCCCEEEECCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH ALQEKKKQEPWRQEDLAGKHPVETSIDIDISDDWVEKAAKLVKATSGNHYVQLNRGVLTV HHHHHHHCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCEEEH DQLNWFLNTMPVELTFMDDNDQFIYYNHFLDHDAMLAPRDPKQVGNTADLVHPKRAVEHV HHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHCCCCHHHCCHHHHHHHH QQVIWALRQGQKELIAMPVPGNKINQKYIMHFYKAMHDADGRYRGVNEWVLDIWPIVSDY HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LRRTGQKLIKDPDSKPDATTSASQSEPQRVLSSRVEGKDVQTINDMKTSTADAITGASET HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC TK CC >Mature Secondary Structure MKIVAIAGSIADISYNRQLLTFIASHYASQIDIELLEIKNIPMFNEDKDQTQSAAVQYLV CEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHH HKIESADGVILATPEHNHTTSPAMKNVIEWLSYKVHPLNQKPVLIVGASWHTQGSSRAQL HHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHHH ALRQIMESPGVGALVMPSDEFLLADAKKAFDELGNLKDSKTIAFLDTVINKFIRWINVLD HHHHHHHCCCCCEEEECCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH ALQEKKKQEPWRQEDLAGKHPVETSIDIDISDDWVEKAAKLVKATSGNHYVQLNRGVLTV HHHHHHHCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCEEEH DQLNWFLNTMPVELTFMDDNDQFIYYNHFLDHDAMLAPRDPKQVGNTADLVHPKRAVEHV HHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHCCCCHHHCCHHHHHHHH QQVIWALRQGQKELIAMPVPGNKINQKYIMHFYKAMHDADGRYRGVNEWVLDIWPIVSDY HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH LRRTGQKLIKDPDSKPDATTSASQSEPQRVLSSRVEGKDVQTINDMKTSTADAITGASET HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC TK CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]