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The map label for this gene is yafL [C]

Identifier: 116494096

GI number: 116494096

Start: 536146

End: 537156

Strand: Direct

Name: yafL [C]

Synonym: LSEI_0539

Alternate gene names: 116494096

Gene position: 536146-537156 (Clockwise)

Preceding gene: 116494095

Following gene: 116494097

Centisome position: 18.52

GC content: 48.96

Gene sequence:

>1011_bases
GTGAAAACTCATAGCAAACGTTGGTTGTTGCGTTTGATCTTTGGCAGCTTAAGCAGTTTCGTGCTGTTTTTTGTTTTGTT
CATGGTCCTCATCGCAGCCATGTTTGCTGGGTTGAACGATAAGAATGGCGGCGGTAGCGACTGCGATATTACCGGTAGCA
TTTCGGCCACGGGTAATTTCAACAAAGACACCTATCAGCAAGCATGGGCCAAATATTTTACGAGTGGCGTGCTCAAAGAT
GAAGCTGACCACACTATCAAAGCAGCAAACAAGGCAGGCGTTTCGCCTGCTCTTTTTGCGTCCATCATGGGACACGAAAG
TGGGTGGGGAAAAAGTTCGGCCGTGCGTAATCAAAACAATCCGTCAGGCCAGATGTCAGGTAGCACCATCATTTCATATC
CGACTATTGAATCAGGCATCGACGCAACGGCGGCCACCTTGCATAACCTGGTTGTCGAGCGACAGTTATCAACGGTTGAG
AAGCTTGGTTCGGTCTACTGTCCTGTGGGTGCGGCTAACGATCCCACGGGACTGAATGCCAGCTGGGTACCATCCGTCAA
AAAAACAATGCTTGAATTTGGAGCAGATGCCAGTGCCACATTGGCAACGACGTGCAACTCTGGCGCTGGAAGTGTGGGTA
ACGGTAGTGCCATCATTACCGAAGCGAAGAAATATCTTGGCGTTCCTTATGTCTGGGGTGGCAAATCTCCAGCGACTGGC
ATGGACTGTTCCGGCTTTGTTGGTTACGTCTTAATGCAGGTCACGCATAAATCTTACCCACAATACACGGTGTCACTGGA
AAGCAAAGGTACGATGCTATTCAACGGCGGCAAACCTGTCATGAGTGAATTACAGCCAGGCGATATGATCTTTTATGGTG
ACCACGGCGCGTCACATCATATTGCTTTTTACGCTGGTGATGGTCAAGTGATCGAGGAACCTGAACCCAATGACGTCTGT
CACATTCGTCCCTATAAAGACTATGAACCAGACTTTGCAGTCAGACCATAG

Upstream 100 bases:

>100_bases
GATAAAGGTGAAGCCATGTTCCTGCTAGGATCTGAAAAACTGCATATGCACTTCCAGGTGACGAAGCAAGAACTTGCCGT
CTTTAAGGGTGGTGCCTAAT

Downstream 100 bases:

>100_bases
AACAAGGAGGTAAACATGAATCGTAAAACAATGCTGGTCAGTGTCATGATGATCCTCGCACTTGGTGCCGGTGCCTATGG
CTGGGCGTCAGCCAATACAG

Product: cell wall-associated hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MKTHSKRWLLRLIFGSLSSFVLFFVLFMVLIAAMFAGLNDKNGGGSDCDITGSISATGNFNKDTYQQAWAKYFTSGVLKD
EADHTIKAANKAGVSPALFASIMGHESGWGKSSAVRNQNNPSGQMSGSTIISYPTIESGIDATAATLHNLVVERQLSTVE
KLGSVYCPVGAANDPTGLNASWVPSVKKTMLEFGADASATLATTCNSGAGSVGNGSAIITEAKKYLGVPYVWGGKSPATG
MDCSGFVGYVLMQVTHKSYPQYTVSLESKGTMLFNGGKPVMSELQPGDMIFYGDHGASHHIAFYAGDGQVIEEPEPNDVC
HIRPYKDYEPDFAVRP

Sequences:

>Translated_336_residues
MKTHSKRWLLRLIFGSLSSFVLFFVLFMVLIAAMFAGLNDKNGGGSDCDITGSISATGNFNKDTYQQAWAKYFTSGVLKD
EADHTIKAANKAGVSPALFASIMGHESGWGKSSAVRNQNNPSGQMSGSTIISYPTIESGIDATAATLHNLVVERQLSTVE
KLGSVYCPVGAANDPTGLNASWVPSVKKTMLEFGADASATLATTCNSGAGSVGNGSAIITEAKKYLGVPYVWGGKSPATG
MDCSGFVGYVLMQVTHKSYPQYTVSLESKGTMLFNGGKPVMSELQPGDMIFYGDHGASHHIAFYAGDGQVIEEPEPNDVC
HIRPYKDYEPDFAVRP
>Mature_336_residues
MKTHSKRWLLRLIFGSLSSFVLFFVLFMVLIAAMFAGLNDKNGGGSDCDITGSISATGNFNKDTYQQAWAKYFTSGVLKD
EADHTIKAANKAGVSPALFASIMGHESGWGKSSAVRNQNNPSGQMSGSTIISYPTIESGIDATAATLHNLVVERQLSTVE
KLGSVYCPVGAANDPTGLNASWVPSVKKTMLEFGADASATLATTCNSGAGSVGNGSAIITEAKKYLGVPYVWGGKSPATG
MDCSGFVGYVLMQVTHKSYPQYTVSLESKGTMLFNGGKPVMSELQPGDMIFYGDHGASHHIAFYAGDGQVIEEPEPNDVC
HIRPYKDYEPDFAVRP

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C40 family [H]

Homologues:

Organism=Escherichia coli, GI1786421, Length=108, Percent_Identity=32.4074074074074, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 35773; Mature: 35773

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTHSKRWLLRLIFGSLSSFVLFFVLFMVLIAAMFAGLNDKNGGGSDCDITGSISATGNF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
NKDTYQQAWAKYFTSGVLKDEADHTIKAANKAGVSPALFASIMGHESGWGKSSAVRNQNN
CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHCCCCCC
PSGQMSGSTIISYPTIESGIDATAATLHNLVVERQLSTVEKLGSVYCPVGAANDPTGLNA
CCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCC
SWVPSVKKTMLEFGADASATLATTCNSGAGSVGNGSAIITEAKKYLGVPYVWGGKSPATG
CCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEHHHHCCCCEEECCCCCCCC
MDCSGFVGYVLMQVTHKSYPQYTVSLESKGTMLFNGGKPVMSELQPGDMIFYGDHGASHH
CCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHCCCCCEEEECCCCCCCE
IAFYAGDGQVIEEPEPNDVCHIRPYKDYEPDFAVRP
EEEEECCCCEECCCCCCCEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKTHSKRWLLRLIFGSLSSFVLFFVLFMVLIAAMFAGLNDKNGGGSDCDITGSISATGNF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
NKDTYQQAWAKYFTSGVLKDEADHTIKAANKAGVSPALFASIMGHESGWGKSSAVRNQNN
CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHCCCCCC
PSGQMSGSTIISYPTIESGIDATAATLHNLVVERQLSTVEKLGSVYCPVGAANDPTGLNA
CCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCC
SWVPSVKKTMLEFGADASATLATTCNSGAGSVGNGSAIITEAKKYLGVPYVWGGKSPATG
CCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEHHHHCCCCEEECCCCCCCC
MDCSGFVGYVLMQVTHKSYPQYTVSLESKGTMLFNGGKPVMSELQPGDMIFYGDHGASHH
CCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCHHHHHCCCCCEEEECCCCCCCE
IAFYAGDGQVIEEPEPNDVCHIRPYKDYEPDFAVRP
EEEEECCCCEECCCCCCCEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2780297 [H]