| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
Click here to switch to the map view.
The map label for this gene is 116494083
Identifier: 116494083
GI number: 116494083
Start: 523828
End: 524226
Strand: Direct
Name: 116494083
Synonym: LSEI_0526
Alternate gene names: NA
Gene position: 523828-524226 (Clockwise)
Preceding gene: 116494082
Following gene: 116494084
Centisome position: 18.09
GC content: 43.11
Gene sequence:
>399_bases ATGCCACTACTGGGAAACGTGGTTCGATTCCACGAAGCGGCCTTGGCTAACGCCAAAATAATGAACGCCAAATGCCAGCT AATTGCAGGTGTTTTTTGCGCTAAAGAAAGGAGACTGAACATGGCTGAATCTGTAGGTATTTGGTTACATGATCGCAATT TGAAGTTAATTTCGAAAGATCGTGATGCTCTTTCTTATCGAATCCAAGCTTCATGGGTTAAGGACCACACGGATTATCCA ATTAAGCCAGGTATGACAGTGGTGATTGGCAATATAAAGCCGCCTAACCAGCTGAAAAACGTTTTGGTTCTAAAGGTGGG GTCAGCGGAATTAAAAAGAGACGGCAGTTTAGTGATTAGCGGAGAGCGCATTAAGTCCGTTCCTAAAAACTTGATATAG
Upstream 100 bases:
>100_bases AGCGCGCCCTAGGGCGCGCTTTTCTTAGGTATTAACGTACCTCCATTTTACCAAAGTTGTGCTCTGTTGCGCAATTTAAT GGTGTGTCGCTGGACAACAA
Downstream 100 bases:
>100_bases GAGGTGATCGTATGTTCAATTTGGTTCTTCAAACAAAAGACATCAAGGAAGCTAAACGGAAAAACGGCCTTCTTGAAATT AGATTTCCACATCCAAAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 131
Protein sequence:
>132_residues MPLLGNVVRFHEAALANAKIMNAKCQLIAGVFCAKERRLNMAESVGIWLHDRNLKLISKDRDALSYRIQASWVKDHTDYP IKPGMTVVIGNIKPPNQLKNVLVLKVGSAELKRDGSLVISGERIKSVPKNLI
Sequences:
>Translated_132_residues MPLLGNVVRFHEAALANAKIMNAKCQLIAGVFCAKERRLNMAESVGIWLHDRNLKLISKDRDALSYRIQASWVKDHTDYP IKPGMTVVIGNIKPPNQLKNVLVLKVGSAELKRDGSLVISGERIKSVPKNLI >Mature_131_residues PLLGNVVRFHEAALANAKIMNAKCQLIAGVFCAKERRLNMAESVGIWLHDRNLKLISKDRDALSYRIQASWVKDHTDYPI KPGMTVVIGNIKPPNQLKNVLVLKVGSAELKRDGSLVISGERIKSVPKNLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14669; Mature: 14537
Theoretical pI: Translated: 10.65; Mature: 10.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLGNVVRFHEAALANAKIMNAKCQLIAGVFCAKERRLNMAESVGIWLHDRNLKLISKD CCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCHHHCEEEEECCCEEEEECC RDALSYRIQASWVKDHTDYPIKPGMTVVIGNIKPPNQLKNVLVLKVGSAELKRDGSLVIS CCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHCEEEEEEECCCCCCCCCCEEEE GERIKSVPKNLI CHHHHCCCCCCC >Mature Secondary Structure PLLGNVVRFHEAALANAKIMNAKCQLIAGVFCAKERRLNMAESVGIWLHDRNLKLISKD CCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCHHHCEEEEECCCEEEEECC RDALSYRIQASWVKDHTDYPIKPGMTVVIGNIKPPNQLKNVLVLKVGSAELKRDGSLVIS CCCEEEEEEEEEECCCCCCCCCCCCEEEECCCCCHHHHCEEEEEEECCCCCCCCCCEEEE GERIKSVPKNLI CHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA