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The map label for this gene is ywnA [H]

Identifier: 116493495

GI number: 116493495

Start: 1742133

End: 1742561

Strand: Reverse

Name: ywnA [H]

Synonym: PEPE_1767

Alternate gene names: 116493495

Gene position: 1742561-1742133 (Counterclockwise)

Preceding gene: 116493496

Following gene: 116493494

Centisome position: 95.1

GC content: 38.0

Gene sequence:

>429_bases
ATGAAGTATTCCTATAAGTTAAGCGATGCAATCCATATTTTGACGTACTTAATTATTTATAAGGACGGCGACTTATCAAG
TAAGACCATTGCAGATAGTATTGAATCCAATGCTAGTACTGTAAGAAATTTGATGTCGGATTTACGAAGTGCGGGACTAA
TTACGACAAAAGTAGGGAGTGCTAGCCCAGCGTTAAATGCTCGTCCGAGTGAGATTAGTATTTTAGATGTTTATAAGGCG
GTGAATATGGATCATAACCTCTTGCATATCGACCCTAAGACAAATCCACAGTGTGTTGTCGGTGGCAGTATTCAAGACGT
GTTAGATGATGCATACGCTGAAATACAGCAAAGTGCCTTTCAAAAAATGGATGAAATAACGATTGCTGATATTACTGAAG
GTATTTTGCAACGACAACAACAAGATTAG

Upstream 100 bases:

>100_bases
CTCTCTCAGTCATCAATCAGATAGTTTAGCAAAAGTTTTGGGTCGGGAATTAACTAGTTTACCAGAGGCTATTAACGAAA
TTTTAAATTAGGTGGTAACG

Downstream 100 bases:

>100_bases
GCACCAAAATTTAGTTAACATGGCTATTTTCAATTACTTAGTAATAAGTTTTAACAATTTTCGAGGTACAATTATAGAAG
AAATAGCGTTATTTTAAAGA

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVGSASPALNARPSEISILDVYKA
VNMDHNLLHIDPKTNPQCVVGGSIQDVLDDAYAEIQQSAFQKMDEITIADITEGILQRQQQD

Sequences:

>Translated_142_residues
MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVGSASPALNARPSEISILDVYKA
VNMDHNLLHIDPKTNPQCVVGGSIQDVLDDAYAEIQQSAFQKMDEITIADITEGILQRQQQD
>Mature_142_residues
MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVGSASPALNARPSEISILDVYKA
VNMDHNLLHIDPKTNPQCVVGGSIQDVLDDAYAEIQQSAFQKMDEITIADITEGILQRQQQD

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 15603; Mature: 15603

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVGS
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCEEEECCCC
ASPALNARPSEISILDVYKAVNMDHNLLHIDPKTNPQCVVGGSIQDVLDDAYAEIQQSAF
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHH
QKMDEITIADITEGILQRQQQD
HHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVGS
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCEEEECCCC
ASPALNARPSEISILDVYKAVNMDHNLLHIDPKTNPQCVVGGSIQDVLDDAYAEIQQSAF
CCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHH
QKMDEITIADITEGILQRQQQD
HHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9150240; 9384377 [H]