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The map label for this gene is ykpA [H]

Identifier: 116493377

GI number: 116493377

Start: 1632868

End: 1634490

Strand: Reverse

Name: ykpA [H]

Synonym: PEPE_1649

Alternate gene names: 116493377

Gene position: 1634490-1632868 (Counterclockwise)

Preceding gene: 116493378

Following gene: 116493376

Centisome position: 89.2

GC content: 36.41

Gene sequence:

>1623_bases
ATGATAACTGTAAATGATATGAGCATGCAATTCTCTGACCGTAAATTGTATAGCGATGTTAATTTAAAATTCACTCCCGG
CAACTGTTACGGAATTATTGGAGCTAATGGTGCTGGTAAATCAACATTTTTAAAAATATTAGAAGGTAAACTTCAACCAA
CTTCTGGTAACGTTAGTATTTCGCCTAATGAACGGATGTCGAGTTTAAATCAGGACCATTATGCTTTTGAAGAATTTACC
GTAATGAATACTGTAATTCAAGGTTATAAAAAGTTATACGAAGTAATGCAAGCTAAGGATGCTTTATATGCTAAAGCGGA
TTTTACTGAAGAAGATGGGATGAAAGCTGCTAACTTAGAGGCTGAATTTGCTGAAATGGATGGTTGGAATGCTGAAGCAG
AAGCATCACAATTACTTCAACAGCTAGGCATTGACGAAAGTCTGCATGACAGTAAGATGAGCGAATTAACCGAAGGTCAA
CGAATTAAAGTGCTTTTGGGACAAGCTTTGTTTGGGAAACCAGACATTTTGATTTTAGATGAACCTACTAACGGACTTGA
TCCAAAATCAATTAGTTGGTTAGAAGATTTCTTAGCTGACTTTCCAAATACCGTAATCGTTGTATCCCATGACCGTCACT
TCTTAAACTCGGTTTGTACGATGATGTGTGATGTCGACTTTGGTAAGATTGAACTTTTCGTTGGTAACTATGATTTCTGG
ATGGAATCTAGTGCTTTAGCCAAACGTCTTCGTGAAAATGCTAATGCTAAAAAAGAAGAACAAATCAAAGAATTACAAGA
ATTCGTTGCTCGTTTTAGTGCTAATGCTTCAAAATCTAAACAAGCCACTTCCCGTAAGAAGCAATTAGATAAGATTACTT
TAGACGATATCAAACCTTCTTCACGTAAATATCCTTTTATTCGTTTTGAACCAGCCCGCGAATTAGGTAATGATCTTGTT
CGGGTGGACAAGGTTAGCAAGTCAATTGATGGTGTGAAAATTCTAGATAATATTACTTTCACCGTTCGCCCTGGTGAGAA
GGCAGCAATTTTGAGTCAAAATGACTTAGCTACAACAGTCTTGATGCAGATTCTAGCTGGAGAAATGGAACCAGATAGCG
GTTCAGTAACTTGGGGACAAACTACTGAACGTAGTTATATTCCGCGTGATATTAACAGTTATTTTGAAGACGATCGTTTT
GATATTTTGGAATGGCTACGCCAATATGCACCTAAAGAAGAAAGTGATAATACTTTTCTCCGCGGTTTTCTAGGTAAGAT
GCTTTTCTCAGGGGAAGATGTACTAAAAAATGTTACTAAACTCTCTGGTGGAGAAAAAGTCCGCTGCATGATTTCAAAAA
CAATGTTGAGCAAGGCTAATGTTTTAATCCTAGATGACCCTACCAATCATTTAGATTTGGAATCAATTACCGCATTAAAT
GAGGGATTGACTAGTTACAAGAGTTCTATTATCATGACCTCGCATGATCATGAGTTTATTCAAACAATTGCGGATCATAT
TATCGAAGTTTCTGATAAAGGTTCGGTTGATCGTGCTGAAACAACTTATGATGAGTTTTTAAATCATGATGCTATCCAAG
AACAAGTAAGTAAATTATATTAG

Upstream 100 bases:

>100_bases
TTCAAGGATAGTAGGTATGTTAAATTAAACAGACTGGTAGAAATTGGGACAAGACATTGTTTTGCCTCTTTTTCTTTTGT
CTACAAAATGGAGGAACTAA

Downstream 100 bases:

>100_bases
GATTATCAGAAGCTATGATATGGGTAAAGTATCATAGTTTCTTAGTATGAAGGGTTAAAACGTTTTAATATGAATTTGAT
ATTACCTTCACAATTGTTTT

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MITVNDMSMQFSDRKLYSDVNLKFTPGNCYGIIGANGAGKSTFLKILEGKLQPTSGNVSISPNERMSSLNQDHYAFEEFT
VMNTVIQGYKKLYEVMQAKDALYAKADFTEEDGMKAANLEAEFAEMDGWNAEAEASQLLQQLGIDESLHDSKMSELTEGQ
RIKVLLGQALFGKPDILILDEPTNGLDPKSISWLEDFLADFPNTVIVVSHDRHFLNSVCTMMCDVDFGKIELFVGNYDFW
MESSALAKRLRENANAKKEEQIKELQEFVARFSANASKSKQATSRKKQLDKITLDDIKPSSRKYPFIRFEPARELGNDLV
RVDKVSKSIDGVKILDNITFTVRPGEKAAILSQNDLATTVLMQILAGEMEPDSGSVTWGQTTERSYIPRDINSYFEDDRF
DILEWLRQYAPKEESDNTFLRGFLGKMLFSGEDVLKNVTKLSGGEKVRCMISKTMLSKANVLILDDPTNHLDLESITALN
EGLTSYKSSIIMTSHDHEFIQTIADHIIEVSDKGSVDRAETTYDEFLNHDAIQEQVSKLY

Sequences:

>Translated_540_residues
MITVNDMSMQFSDRKLYSDVNLKFTPGNCYGIIGANGAGKSTFLKILEGKLQPTSGNVSISPNERMSSLNQDHYAFEEFT
VMNTVIQGYKKLYEVMQAKDALYAKADFTEEDGMKAANLEAEFAEMDGWNAEAEASQLLQQLGIDESLHDSKMSELTEGQ
RIKVLLGQALFGKPDILILDEPTNGLDPKSISWLEDFLADFPNTVIVVSHDRHFLNSVCTMMCDVDFGKIELFVGNYDFW
MESSALAKRLRENANAKKEEQIKELQEFVARFSANASKSKQATSRKKQLDKITLDDIKPSSRKYPFIRFEPARELGNDLV
RVDKVSKSIDGVKILDNITFTVRPGEKAAILSQNDLATTVLMQILAGEMEPDSGSVTWGQTTERSYIPRDINSYFEDDRF
DILEWLRQYAPKEESDNTFLRGFLGKMLFSGEDVLKNVTKLSGGEKVRCMISKTMLSKANVLILDDPTNHLDLESITALN
EGLTSYKSSIIMTSHDHEFIQTIADHIIEVSDKGSVDRAETTYDEFLNHDAIQEQVSKLY
>Mature_540_residues
MITVNDMSMQFSDRKLYSDVNLKFTPGNCYGIIGANGAGKSTFLKILEGKLQPTSGNVSISPNERMSSLNQDHYAFEEFT
VMNTVIQGYKKLYEVMQAKDALYAKADFTEEDGMKAANLEAEFAEMDGWNAEAEASQLLQQLGIDESLHDSKMSELTEGQ
RIKVLLGQALFGKPDILILDEPTNGLDPKSISWLEDFLADFPNTVIVVSHDRHFLNSVCTMMCDVDFGKIELFVGNYDFW
MESSALAKRLRENANAKKEEQIKELQEFVARFSANASKSKQATSRKKQLDKITLDDIKPSSRKYPFIRFEPARELGNDLV
RVDKVSKSIDGVKILDNITFTVRPGEKAAILSQNDLATTVLMQILAGEMEPDSGSVTWGQTTERSYIPRDINSYFEDDRF
DILEWLRQYAPKEESDNTFLRGFLGKMLFSGEDVLKNVTKLSGGEKVRCMISKTMLSKANVLILDDPTNHLDLESITALN
EGLTSYKSSIIMTSHDHEFIQTIADHIIEVSDKGSVDRAETTYDEFLNHDAIQEQVSKLY

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=550, Percent_Identity=26.7272727272727, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI27881506, Length=551, Percent_Identity=27.4047186932849, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI10947137, Length=551, Percent_Identity=27.4047186932849, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI69354671, Length=239, Percent_Identity=29.2887029288703, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI10947135, Length=239, Percent_Identity=29.2887029288703, Blast_Score=111, Evalue=2e-24,
Organism=Homo sapiens, GI27436953, Length=166, Percent_Identity=33.1325301204819, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI105990541, Length=203, Percent_Identity=25.615763546798, Blast_Score=74, Evalue=4e-13,
Organism=Homo sapiens, GI47078218, Length=245, Percent_Identity=24.4897959183673, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI45446740, Length=245, Percent_Identity=24.4897959183673, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI255708477, Length=211, Percent_Identity=27.0142180094787, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=46.5290806754221, Blast_Score=516, Evalue=1e-147,
Organism=Escherichia coli, GI1789751, Length=515, Percent_Identity=30.2912621359223, Blast_Score=262, Evalue=4e-71,
Organism=Escherichia coli, GI2367384, Length=523, Percent_Identity=29.8279158699809, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI1787182, Length=546, Percent_Identity=27.8388278388278, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1786398, Length=217, Percent_Identity=26.2672811059908, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=24.5901639344262, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787029, Length=247, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=23.7373737373737, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786975, Length=230, Percent_Identity=26.0869565217391, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=27.7511961722488, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI48994943, Length=242, Percent_Identity=23.9669421487603, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=28.5024154589372, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1790525, Length=221, Percent_Identity=23.0769230769231, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787712, Length=254, Percent_Identity=23.2283464566929, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=523, Percent_Identity=27.3422562141491, Blast_Score=200, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17553372, Length=525, Percent_Identity=27.4285714285714, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17559834, Length=549, Percent_Identity=23.1329690346084, Blast_Score=169, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI17565586, Length=238, Percent_Identity=23.109243697479, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=24.8868778280543, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=535, Percent_Identity=29.3457943925234, Blast_Score=226, Evalue=7e-60,
Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=29.2592592592593, Blast_Score=205, Evalue=2e-53,
Organism=Saccharomyces cerevisiae, GI6325030, Length=423, Percent_Identity=23.8770685579196, Blast_Score=100, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6323278, Length=414, Percent_Identity=21.4975845410628, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6324314, Length=414, Percent_Identity=21.4975845410628, Blast_Score=87, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6320266, Length=414, Percent_Identity=21.4975845410628, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24666836, Length=539, Percent_Identity=27.2727272727273, Blast_Score=210, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24642252, Length=538, Percent_Identity=24.7211895910781, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI18859989, Length=538, Percent_Identity=24.7211895910781, Blast_Score=194, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24641342, Length=526, Percent_Identity=27.7566539923954, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24641565, Length=271, Percent_Identity=24.3542435424354, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60820; Mature: 60820

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITVNDMSMQFSDRKLYSDVNLKFTPGNCYGIIGANGAGKSTFLKILEGKLQPTSGNVSI
CEEECCCCCCCCCCHHHCCCEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEE
SPNERMSSLNQDHYAFEEFTVMNTVIQGYKKLYEVMQAKDALYAKADFTEEDGMKAANLE
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHCCCEECCCC
AEFAEMDGWNAEAEASQLLQQLGIDESLHDSKMSELTEGQRIKVLLGQALFGKPDILILD
HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECHHHCCCCCEEEEE
EPTNGLDPKSISWLEDFLADFPNTVIVVSHDRHFLNSVCTMMCDVDFGKIELFVGNYDFW
CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHH
MESSALAKRLRENANAKKEEQIKELQEFVARFSANASKSKQATSRKKQLDKITLDDIKPS
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
SRKYPFIRFEPARELGNDLVRVDKVSKSIDGVKILDNITFTVRPGEKAAILSQNDLATTV
CCCCCEEEECCHHHHCHHHHHHHHHHHCCCCEEEECCCEEEECCCCCEEEECCCHHHHHH
LMQILAGEMEPDSGSVTWGQTTERSYIPRDINSYFEDDRFDILEWLRQYAPKEESDNTFL
HHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHH
RGFLGKMLFSGEDVLKNVTKLSGGEKVRCMISKTMLSKANVLILDDPTNHLDLESITALN
HHHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
EGLTSYKSSIIMTSHDHEFIQTIADHIIEVSDKGSVDRAETTYDEFLNHDAIQEQVSKLY
HHHHHHHCEEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure
MITVNDMSMQFSDRKLYSDVNLKFTPGNCYGIIGANGAGKSTFLKILEGKLQPTSGNVSI
CEEECCCCCCCCCCHHHCCCEEEECCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCEEE
SPNERMSSLNQDHYAFEEFTVMNTVIQGYKKLYEVMQAKDALYAKADFTEEDGMKAANLE
CCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHCCCEECCCC
AEFAEMDGWNAEAEASQLLQQLGIDESLHDSKMSELTEGQRIKVLLGQALFGKPDILILD
HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECHHHCCCCCEEEEE
EPTNGLDPKSISWLEDFLADFPNTVIVVSHDRHFLNSVCTMMCDVDFGKIELFVGNYDFW
CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHH
MESSALAKRLRENANAKKEEQIKELQEFVARFSANASKSKQATSRKKQLDKITLDDIKPS
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
SRKYPFIRFEPARELGNDLVRVDKVSKSIDGVKILDNITFTVRPGEKAAILSQNDLATTV
CCCCCEEEECCHHHHCHHHHHHHHHHHCCCCEEEECCCEEEECCCCCEEEECCCHHHHHH
LMQILAGEMEPDSGSVTWGQTTERSYIPRDINSYFEDDRFDILEWLRQYAPKEESDNTFL
HHHHHHCCCCCCCCCEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHH
RGFLGKMLFSGEDVLKNVTKLSGGEKVRCMISKTMLSKANVLILDDPTNHLDLESITALN
HHHHHHHHHCCHHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
EGLTSYKSSIIMTSHDHEFIQTIADHIIEVSDKGSVDRAETTYDEFLNHDAIQEQVSKLY
HHHHHHHCEEEEECCCHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]