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The map label for this gene is ydeD [H]

Identifier: 116493375

GI number: 116493375

Start: 1631082

End: 1631996

Strand: Reverse

Name: ydeD [H]

Synonym: PEPE_1647

Alternate gene names: 116493375

Gene position: 1631996-1631082 (Counterclockwise)

Preceding gene: 116493376

Following gene: 116493374

Centisome position: 89.06

GC content: 36.07

Gene sequence:

>915_bases
ATGGAAAAAGAAGTTTTGAACAAGCATATTGGTAAAGGAATTTTTTGGGCCCTTTTAGCGTCTTGTATGTGGGGAATTTC
TGGAACGGTATTGGAAGTTATTTCTCAAGGAGAGAGTATTCCAGCTTCCTGGTTTTTATCTGCTAGAACATTAGGTGCTG
GTTTAGTATTAATTGTTATCAGTTTTATTAAGTATCGGATGCAAATTTTTGATGTTTTTAAATCAGTTAAAACCGTTTTA
TGGTTGTTAGCGTATGCTATTTTTGGTTTAATGGCTAATTTATTAACTTTCTATATTAGTGTTCAAGAAGGTAATGCGTC
AGCATCAACCATTCTTCAGTATTTAAGCCCCTTATTTATTGTTTTGGGGAGCTTAGTATTTCAGCGTGTTCGCCCGATGC
GAAGCGATGTGATTGCTTTCGTAATCGCAATGGCAGGTGTTTTCTTGGCAATAACACATGGAAACATCCATGAACTAGCT
ATTTCTAATAAAGCATTGATTTGGGGAATTCTTTCAGGAATTACAGCTGCATTTTATGTTGTACTTCCTAAACCAGTAAC
TAAAAACCATCCTCCAATGATTGTTTTAGGATGGGCACTAATTATCGGTAGTATATTATTTAATATTCATCAACCAGTTT
GGGTAGATACACCAGCTCTGACACCACAGTTAATGCTTTCAATGGCAACGGTAATTCTAGTGGGAACTATTTTACCTTTC
TGGGCTTTATTACACAGTTTGAAATTTGCTCCATCTGCCGTTGTAAGTATTTTGGATGCTGTCCAGCCGGTCGTGACTTT
TGTGTTGAGTTTACTATTCCTAGGCCATCCTTTTAACGTCGTAGAATTAATCGGTGCAGTATTAGTTATCATAGCTATTA
TTATCATTCAACGCTCAAGAACTAATCTAGAATAA

Upstream 100 bases:

>100_bases
AAAATACACGGTGTTAGGAAATGTGACACGAATATACTTTATAGCCTATAACTTTTTAGGTATACTTAAATATATTAGAA
AAATGTATGTGAGGTTTTTG

Downstream 100 bases:

>100_bases
AATTAAAACTTCATCTTAATTAATTAAGACCCGATGGAAATCGAGGTCTTTTTTCTTGACTTTTTAAGTTTACAAATGTA
GTCTATATTTAAAGATTACA

Product: DMT family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MEKEVLNKHIGKGIFWALLASCMWGISGTVLEVISQGESIPASWFLSARTLGAGLVLIVISFIKYRMQIFDVFKSVKTVL
WLLAYAIFGLMANLLTFYISVQEGNASASTILQYLSPLFIVLGSLVFQRVRPMRSDVIAFVIAMAGVFLAITHGNIHELA
ISNKALIWGILSGITAAFYVVLPKPVTKNHPPMIVLGWALIIGSILFNIHQPVWVDTPALTPQLMLSMATVILVGTILPF
WALLHSLKFAPSAVVSILDAVQPVVTFVLSLLFLGHPFNVVELIGAVLVIIAIIIIQRSRTNLE

Sequences:

>Translated_304_residues
MEKEVLNKHIGKGIFWALLASCMWGISGTVLEVISQGESIPASWFLSARTLGAGLVLIVISFIKYRMQIFDVFKSVKTVL
WLLAYAIFGLMANLLTFYISVQEGNASASTILQYLSPLFIVLGSLVFQRVRPMRSDVIAFVIAMAGVFLAITHGNIHELA
ISNKALIWGILSGITAAFYVVLPKPVTKNHPPMIVLGWALIIGSILFNIHQPVWVDTPALTPQLMLSMATVILVGTILPF
WALLHSLKFAPSAVVSILDAVQPVVTFVLSLLFLGHPFNVVELIGAVLVIIAIIIIQRSRTNLE
>Mature_304_residues
MEKEVLNKHIGKGIFWALLASCMWGISGTVLEVISQGESIPASWFLSARTLGAGLVLIVISFIKYRMQIFDVFKSVKTVL
WLLAYAIFGLMANLLTFYISVQEGNASASTILQYLSPLFIVLGSLVFQRVRPMRSDVIAFVIAMAGVFLAITHGNIHELA
ISNKALIWGILSGITAAFYVVLPKPVTKNHPPMIVLGWALIIGSILFNIHQPVWVDTPALTPQLMLSMATVILVGTILPF
WALLHSLKFAPSAVVSILDAVQPVVTFVLSLLFLGHPFNVVELIGAVLVIIAIIIIQRSRTNLE

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1790092, Length=294, Percent_Identity=29.9319727891156, Blast_Score=127, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33258; Mature: 33258

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEVLNKHIGKGIFWALLASCMWGISGTVLEVISQGESIPASWFLSARTLGAGLVLIVI
CCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
SFIKYRMQIFDVFKSVKTVLWLLAYAIFGLMANLLTFYISVQEGNASASTILQYLSPLFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VLGSLVFQRVRPMRSDVIAFVIAMAGVFLAITHGNIHELAISNKALIWGILSGITAAFYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
VLPKPVTKNHPPMIVLGWALIIGSILFNIHQPVWVDTPALTPQLMLSMATVILVGTILPF
HCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
WALLHSLKFAPSAVVSILDAVQPVVTFVLSLLFLGHPFNVVELIGAVLVIIAIIIIQRSR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
TNLE
CCCC
>Mature Secondary Structure
MEKEVLNKHIGKGIFWALLASCMWGISGTVLEVISQGESIPASWFLSARTLGAGLVLIVI
CCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
SFIKYRMQIFDVFKSVKTVLWLLAYAIFGLMANLLTFYISVQEGNASASTILQYLSPLFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VLGSLVFQRVRPMRSDVIAFVIAMAGVFLAITHGNIHELAISNKALIWGILSGITAAFYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
VLPKPVTKNHPPMIVLGWALIIGSILFNIHQPVWVDTPALTPQLMLSMATVILVGTILPF
HCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHH
WALLHSLKFAPSAVVSILDAVQPVVTFVLSLLFLGHPFNVVELIGAVLVIIAIIIIQRSR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
TNLE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]