| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492827
Identifier: 116492827
GI number: 116492827
Start: 1060789
End: 1061379
Strand: Reverse
Name: 116492827
Synonym: PEPE_1064
Alternate gene names: NA
Gene position: 1061379-1060789 (Counterclockwise)
Preceding gene: 116492828
Following gene: 116492826
Centisome position: 57.92
GC content: 31.47
Gene sequence:
>591_bases ATGAATAAATATATGTATCATTTTTGGAAATGGGGATTTTTAGTCCTGCTCTCCATTTTTTTAGCGGGCGGTATTTATGT AACTTTTAAAGCTTCTCGTCCAATTCAGCAAGTTGATGACCAAGTAGTTCGAAGTAGTAACCACTATGATCGAATTCCAA TTAAATTAAAGAAAAATCAAATTAATGATCTAAGTGCAGCTTATCTTTCTCAATTTCAAAAAGATGAAGACTTTAATTAT GAGTTTAAAATTGGTCAACGCTACGCTATTTTAAGCGGAGAAACTGAAATTTTAGGTAAAAAGATTCAAATTGCGTTAAC GATGATTCCAAAGGTTACCAAAAGTGGTAATATCAAACTTAAAGCGCATGGGCTAACGGTGGGAACGCTAAATTTGTCAG CTAAAATTGTTTTGAAATATATTTCACGTAATTATCAACTTCCTAAATGGGTAAGTATTGATGGCGATGAAGCACTTTTA CGTTTGAATCAGATCAAAACAACTAATAAAGTCAGCTTCCAAGCTAAAACAATCGATATTGATAAAAACGATTTTCAATT CATAATTAACGTTCCTAAAGCCAATAATTAA
Upstream 100 bases:
>100_bases ATGCAGATCATTTTCATCCCAACGACAAGGGATATGATATGATGGCAGATAAGATCTTTAAGGCCATGGATCGGGCAAGA ATTTTCAAGTAGGTGAAGAA
Downstream 100 bases:
>100_bases GGAGAATGCTAATGAAAAAATCATTTTTTGAATATTTAATGACACAACGCAATCCGCAACCTAATAATGAAGTTGAAGAA TTTGCTAACCAAGCTTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MNKYMYHFWKWGFLVLLSIFLAGGIYVTFKASRPIQQVDDQVVRSSNHYDRIPIKLKKNQINDLSAAYLSQFQKDEDFNY EFKIGQRYAILSGETEILGKKIQIALTMIPKVTKSGNIKLKAHGLTVGTLNLSAKIVLKYISRNYQLPKWVSIDGDEALL RLNQIKTTNKVSFQAKTIDIDKNDFQFIINVPKANN
Sequences:
>Translated_196_residues MNKYMYHFWKWGFLVLLSIFLAGGIYVTFKASRPIQQVDDQVVRSSNHYDRIPIKLKKNQINDLSAAYLSQFQKDEDFNY EFKIGQRYAILSGETEILGKKIQIALTMIPKVTKSGNIKLKAHGLTVGTLNLSAKIVLKYISRNYQLPKWVSIDGDEALL RLNQIKTTNKVSFQAKTIDIDKNDFQFIINVPKANN >Mature_196_residues MNKYMYHFWKWGFLVLLSIFLAGGIYVTFKASRPIQQVDDQVVRSSNHYDRIPIKLKKNQINDLSAAYLSQFQKDEDFNY EFKIGQRYAILSGETEILGKKIQIALTMIPKVTKSGNIKLKAHGLTVGTLNLSAKIVLKYISRNYQLPKWVSIDGDEALL RLNQIKTTNKVSFQAKTIDIDKNDFQFIINVPKANN
Specific function: Unknown
COG id: COG4698
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22536; Mature: 22536
Theoretical pI: Translated: 10.31; Mature: 10.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKYMYHFWKWGFLVLLSIFLAGGIYVTFKASRPIQQVDDQVVRSSNHYDRIPIKLKKNQ CCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCC INDLSAAYLSQFQKDEDFNYEFKIGQRYAILSGETEILGKKIQIALTMIPKVTKSGNIKL CCHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCHHHCCCEEEEEEEECCCCCCCCCEEE KAHGLTVGTLNLSAKIVLKYISRNYQLPKWVSIDGDEALLRLNQIKTTNKVSFQAKTIDI EECCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCHHHEEEHHCCCCCEEEEEEEEEEC DKNDFQFIINVPKANN CCCCEEEEEECCCCCC >Mature Secondary Structure MNKYMYHFWKWGFLVLLSIFLAGGIYVTFKASRPIQQVDDQVVRSSNHYDRIPIKLKKNQ CCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCC INDLSAAYLSQFQKDEDFNYEFKIGQRYAILSGETEILGKKIQIALTMIPKVTKSGNIKL CCHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCHHHCCCEEEEEEEECCCCCCCCCEEE KAHGLTVGTLNLSAKIVLKYISRNYQLPKWVSIDGDEALLRLNQIKTTNKVSFQAKTIDI EECCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCHHHEEEHHCCCCCEEEEEEEEEEC DKNDFQFIINVPKANN CCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA