Click here to switch to the map view.

The map label for this gene is 116492764

Identifier: 116492764

GI number: 116492764

Start: 1010664

End: 1011896

Strand: Reverse

Name: 116492764

Synonym: PEPE_1001

Alternate gene names: NA

Gene position: 1011896-1010664 (Counterclockwise)

Preceding gene: 116492765

Following gene: 116492763

Centisome position: 55.22

GC content: 39.98

Gene sequence:

>1233_bases
ATGGCTAATATTAATACAATCAATGACGCTTGGATTGCCCAAGGTCAAAAGGTATCAGACTTAAACGACAAATTAAACGC
AGCTGTTCTTGACGATAGCTTTGATCAAGACCAATTTAAAGCAATGAAACAAGACCGTGACAATGCGGTTGCTCGTCGTG
ACGCTTTACATGAACAATTAGAAGAAGAACGTAAGGCTCAAGAAATTGCCAATATGGAGGATAAGGACAAAACCCCACTT
GATGATAAAGAAAAAGACATCAAAGCTGAGTTCATTAAGAACTTCCAAGGCATGATTAAAGGTGACCCTAAAGTTATGAA
CTTGGTAACTTCATCTACTGACGAAGGTGGCAACGCAATTGGTTTGACTATCCCTCAAGATATTCAAACAGCCATTAATA
CGCTTGTTCGTCAATATGATTCATTACAACAATATGTCAATCGAGAAGCTGTTACAACACAAACAGGTTCACGAGTTTAC
GAAAAGTGGACTGACGTTACTCCACTAGCTGACTTAGATGACGAAACAGCTACTATTGGTGACAATGATGATCCTAAGCT
ATCCATCATCAAATATACGATTCATCGTTATGCTGGTATTACTACTGCCACTAATTCGTTACTCAAAGATACAGTTGACA
ACATCATGACTTGGTTGTCGCAATGGATTGCTAAGAAAGTTGTTGTTACTCGCAATACTAAAATCATTGGGGCGATGAAC
GAAGCACCTAAGAAACCAACCTTAGCTAAGTTCGATGACATTATTACCATGATTAATACAGCTGTTGACCCAGCAATTAA
GGCAACATCATTCTTAATGACAAATACTTCAGGCTTAAATGTGCTTTCCGAAGTTAAGGATGCTATGGGACGTTACCTAT
TGCAACCAGACCCAACACAACCAGACCAATATTTAATCCATGGCAAGCGAATTGTAGAAGTAGCTGACAAGTGGTTGCCT
ACTGCTGGAACTGCAGCAGCCCCAGTTTATCCATTGTATTATGGTGACTTATCACAAGCGGTTACTTTATTTGACCGAGA
AAATGCGTCATTGTTAACGACTAATATCGGCGGTGGTGCTTTTGAAAAAGACCAAACCAAGATTCGTGTAATTGATCGTT
TTGACGTTGAACCAACTGATAAAGAAGCCTTTGTTGCGGGTTCATTCAGCCAAATTGCTGACCAACCAGCAAACTTTGCA
GCAAGTGCTGCTCCAGCAACAGCCAGTAAGTAA

Upstream 100 bases:

>100_bases
AGCCGTCTAAAAAAGAAAATACTACTAATGGTCAATCTGCTGAATTACGAAACAGCAAATTGGCTATTTTATTTGAAAAA
AATCAAAAGGAGGCCAACTA

Downstream 100 bases:

>100_bases
TTAGTCAATTATGTCGCCAATAAAACACACAGTACAGTGATAAGCTGGGCGGCTAAGTAAGGATGTGATTTAAGTGGCAG
CCAATTTAGAAACATTGAAA

Product: phage phi-C31 gp36 major capsid-like protein

Products: NA

Alternate protein names: HK97 Family Phage Capsid Protein; Head Protein; Phage-Related Head Protein; Phage Head Protein; Peptidase U; Capsid Protein; Head Protein-Like Protein; Prophage Lp3 Protein; Phage Protein; Phage Capsid Protein; Phage-Related Prohead Protease; Phage-Like Protein; Bacteriophage Capsid Protein

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MANINTINDAWIAQGQKVSDLNDKLNAAVLDDSFDQDQFKAMKQDRDNAVARRDALHEQLEEERKAQEIANMEDKDKTPL
DDKEKDIKAEFIKNFQGMIKGDPKVMNLVTSSTDEGGNAIGLTIPQDIQTAINTLVRQYDSLQQYVNREAVTTQTGSRVY
EKWTDVTPLADLDDETATIGDNDDPKLSIIKYTIHRYAGITTATNSLLKDTVDNIMTWLSQWIAKKVVVTRNTKIIGAMN
EAPKKPTLAKFDDIITMINTAVDPAIKATSFLMTNTSGLNVLSEVKDAMGRYLLQPDPTQPDQYLIHGKRIVEVADKWLP
TAGTAAAPVYPLYYGDLSQAVTLFDRENASLLTTNIGGGAFEKDQTKIRVIDRFDVEPTDKEAFVAGSFSQIADQPANFA
ASAAPATASK

Sequences:

>Translated_410_residues
MANINTINDAWIAQGQKVSDLNDKLNAAVLDDSFDQDQFKAMKQDRDNAVARRDALHEQLEEERKAQEIANMEDKDKTPL
DDKEKDIKAEFIKNFQGMIKGDPKVMNLVTSSTDEGGNAIGLTIPQDIQTAINTLVRQYDSLQQYVNREAVTTQTGSRVY
EKWTDVTPLADLDDETATIGDNDDPKLSIIKYTIHRYAGITTATNSLLKDTVDNIMTWLSQWIAKKVVVTRNTKIIGAMN
EAPKKPTLAKFDDIITMINTAVDPAIKATSFLMTNTSGLNVLSEVKDAMGRYLLQPDPTQPDQYLIHGKRIVEVADKWLP
TAGTAAAPVYPLYYGDLSQAVTLFDRENASLLTTNIGGGAFEKDQTKIRVIDRFDVEPTDKEAFVAGSFSQIADQPANFA
ASAAPATASK
>Mature_409_residues
ANINTINDAWIAQGQKVSDLNDKLNAAVLDDSFDQDQFKAMKQDRDNAVARRDALHEQLEEERKAQEIANMEDKDKTPLD
DKEKDIKAEFIKNFQGMIKGDPKVMNLVTSSTDEGGNAIGLTIPQDIQTAINTLVRQYDSLQQYVNREAVTTQTGSRVYE
KWTDVTPLADLDDETATIGDNDDPKLSIIKYTIHRYAGITTATNSLLKDTVDNIMTWLSQWIAKKVVVTRNTKIIGAMNE
APKKPTLAKFDDIITMINTAVDPAIKATSFLMTNTSGLNVLSEVKDAMGRYLLQPDPTQPDQYLIHGKRIVEVADKWLPT
AGTAAAPVYPLYYGDLSQAVTLFDRENASLLTTNIGGGAFEKDQTKIRVIDRFDVEPTDKEAFVAGSFSQIADQPANFAA
SAAPATASK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45258; Mature: 45127

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANINTINDAWIAQGQKVSDLNDKLNAAVLDDSFDQDQFKAMKQDRDNAVARRDALHEQL
CCCCCCCCHHHHHCCCCHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EEERKAQEIANMEDKDKTPLDDKEKDIKAEFIKNFQGMIKGDPKVMNLVTSSTDEGGNAI
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEE
GLTIPQDIQTAINTLVRQYDSLQQYVNREAVTTQTGSRVYEKWTDVTPLADLDDETATIG
EEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
DNDDPKLSIIKYTIHRYAGITTATNSLLKDTVDNIMTWLSQWIAKKVVVTRNTKIIGAMN
CCCCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCC
EAPKKPTLAKFDDIITMINTAVDPAIKATSFLMTNTSGLNVLSEVKDAMGRYLLQPDPTQ
CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCCCCC
PDQYLIHGKRIVEVADKWLPTAGTAAAPVYPLYYGDLSQAVTLFDRENASLLTTNIGGGA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCEEEEEECCCCC
FEKDQTKIRVIDRFDVEPTDKEAFVAGSFSQIADQPANFAASAAPATASK
CCCCCCEEEEEEECCCCCCCCCCEEECCHHHHHCCCCCHHCCCCCCCCCC
>Mature Secondary Structure 
ANINTINDAWIAQGQKVSDLNDKLNAAVLDDSFDQDQFKAMKQDRDNAVARRDALHEQL
CCCCCCCHHHHHCCCCHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EEERKAQEIANMEDKDKTPLDDKEKDIKAEFIKNFQGMIKGDPKVMNLVTSSTDEGGNAI
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEE
GLTIPQDIQTAINTLVRQYDSLQQYVNREAVTTQTGSRVYEKWTDVTPLADLDDETATIG
EEECCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCC
DNDDPKLSIIKYTIHRYAGITTATNSLLKDTVDNIMTWLSQWIAKKVVVTRNTKIIGAMN
CCCCCCEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEECCC
EAPKKPTLAKFDDIITMINTAVDPAIKATSFLMTNTSGLNVLSEVKDAMGRYLLQPDPTQ
CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHEEECCCCHHHHHHHHHHHHCCCCCCCCCC
PDQYLIHGKRIVEVADKWLPTAGTAAAPVYPLYYGDLSQAVTLFDRENASLLTTNIGGGA
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHHHCCCCCEEEEEECCCCC
FEKDQTKIRVIDRFDVEPTDKEAFVAGSFSQIADQPANFAASAAPATASK
CCCCCCEEEEEEECCCCCCCCCCEEECCHHHHHCCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA