Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

Click here to switch to the map view.

The map label for this gene is 116492744

Identifier: 116492744

GI number: 116492744

Start: 990256

End: 991047

Strand: Reverse

Name: 116492744

Synonym: PEPE_0981

Alternate gene names: NA

Gene position: 991047-990256 (Counterclockwise)

Preceding gene: 116492745

Following gene: 116492743

Centisome position: 54.09

GC content: 31.19

Gene sequence:

>792_bases
ATGAAGATCGCCAAGAAGCAAATCATTGATAACGATCCTAATTTTGATTTAATGTGGCAATGGAACAAAAAAGGAGAACT
CACCTTAAATCAAGATGAGCTATATTTTTTGTATCAAGTTATATATGTATTTGGAATTATCGATGGTAATCCAAATTATG
AGAATAGATATGGATTAGCACACCAGAAAAATCAAACGCATGCCTATCAGGCTGTAATGAATTTGGCATTGGTCATTAAA
AAAACATTTAACTTCCAGTTAGCAACCACGGATTTAGAACTAATGTTTAATTTTATAGCATTTCATGAACGTAGTACTTT
TTTTTATGGAAATTCTGACGTGTTTTTCAACCGTTCCTACATAACGGAGTTGAGAGAAGAGCATCCTAGGAAATATCAAA
TTATGCAAAAATTAAAGGAACAGTTAGTTAAACATTCTAACCAATCAGTTACTAACTTATTAGCTAATTGGGAACAATTA
TTTTTGAATTATTACTTCATCTTAGATTACTATGATCTGTTCGCAAAAAAAGTTACACCAGTTAAAATTCTAGTACAAGA
CGACTTACATCATACGCATCGACTATGGTTGATGAACAAAATTCGTGCTTACTTTGGTCATTCTTTTGCTTTTGAATTTT
ACGACTATAAAACACCAGTTTCAAAAGTAGATTTGGTAATTTCTAATTACTATATTGATACTAAAGATTGTCCACTTATT
TTAATGAAAAACTTACCTACAGAACGTAATTGGCGGCAGTTAGGCGCAATGCTTTACCACTTAACCAAATAA

Upstream 100 bases:

>100_bases
TGAAGAGATATACGGCATTAGTTTAGATCCTCTTCAGCGTAAAAAATTTGCTTATTGGCTAGCAATTACCTTAGAACGAA
GCCAGATTGCACCACTAAAT

Downstream 100 bases:

>100_bases
AAGATGTAATTAGGTTAATTGCATCTTTTTTATTGCCCAAAATACTTTAATTTTTTTCAGAATTAAGAAAAAAATTAGAC
TAGTAAGTCCCTCAGATGAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLAHQKNQTHAYQAVMNLALVIK
KTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSYITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQL
FLNYYFILDYYDLFAKKVTPVKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI
LMKNLPTERNWRQLGAMLYHLTK

Sequences:

>Translated_263_residues
MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLAHQKNQTHAYQAVMNLALVIK
KTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSYITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQL
FLNYYFILDYYDLFAKKVTPVKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI
LMKNLPTERNWRQLGAMLYHLTK
>Mature_263_residues
MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLAHQKNQTHAYQAVMNLALVIK
KTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSYITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQL
FLNYYFILDYYDLFAKKVTPVKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI
LMKNLPTERNWRQLGAMLYHLTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31713; Mature: 31713

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLA
CCCCHHHHCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCCCCCCCCCCC
HQKNQTHAYQAVMNLALVIKKTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSY
CCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCEEEECCCCEEECHHH
ITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQLFLNYYFILDYYDLFAKKVTP
HHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI
EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHEEEEEEEEECCCCCCEE
LMKNLPTERNWRQLGAMLYHLTK
EECCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLA
CCCCHHHHCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCCCCCCCCCCC
HQKNQTHAYQAVMNLALVIKKTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSY
CCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCEEEECCCCEEECHHH
ITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQLFLNYYFILDYYDLFAKKVTP
HHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI
EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHEEEEEEEEECCCCCCEE
LMKNLPTERNWRQLGAMLYHLTK
EECCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA