| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492744
Identifier: 116492744
GI number: 116492744
Start: 990256
End: 991047
Strand: Reverse
Name: 116492744
Synonym: PEPE_0981
Alternate gene names: NA
Gene position: 991047-990256 (Counterclockwise)
Preceding gene: 116492745
Following gene: 116492743
Centisome position: 54.09
GC content: 31.19
Gene sequence:
>792_bases ATGAAGATCGCCAAGAAGCAAATCATTGATAACGATCCTAATTTTGATTTAATGTGGCAATGGAACAAAAAAGGAGAACT CACCTTAAATCAAGATGAGCTATATTTTTTGTATCAAGTTATATATGTATTTGGAATTATCGATGGTAATCCAAATTATG AGAATAGATATGGATTAGCACACCAGAAAAATCAAACGCATGCCTATCAGGCTGTAATGAATTTGGCATTGGTCATTAAA AAAACATTTAACTTCCAGTTAGCAACCACGGATTTAGAACTAATGTTTAATTTTATAGCATTTCATGAACGTAGTACTTT TTTTTATGGAAATTCTGACGTGTTTTTCAACCGTTCCTACATAACGGAGTTGAGAGAAGAGCATCCTAGGAAATATCAAA TTATGCAAAAATTAAAGGAACAGTTAGTTAAACATTCTAACCAATCAGTTACTAACTTATTAGCTAATTGGGAACAATTA TTTTTGAATTATTACTTCATCTTAGATTACTATGATCTGTTCGCAAAAAAAGTTACACCAGTTAAAATTCTAGTACAAGA CGACTTACATCATACGCATCGACTATGGTTGATGAACAAAATTCGTGCTTACTTTGGTCATTCTTTTGCTTTTGAATTTT ACGACTATAAAACACCAGTTTCAAAAGTAGATTTGGTAATTTCTAATTACTATATTGATACTAAAGATTGTCCACTTATT TTAATGAAAAACTTACCTACAGAACGTAATTGGCGGCAGTTAGGCGCAATGCTTTACCACTTAACCAAATAA
Upstream 100 bases:
>100_bases TGAAGAGATATACGGCATTAGTTTAGATCCTCTTCAGCGTAAAAAATTTGCTTATTGGCTAGCAATTACCTTAGAACGAA GCCAGATTGCACCACTAAAT
Downstream 100 bases:
>100_bases AAGATGTAATTAGGTTAATTGCATCTTTTTTATTGCCCAAAATACTTTAATTTTTTTCAGAATTAAGAAAAAAATTAGAC TAGTAAGTCCCTCAGATGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLAHQKNQTHAYQAVMNLALVIK KTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSYITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQL FLNYYFILDYYDLFAKKVTPVKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI LMKNLPTERNWRQLGAMLYHLTK
Sequences:
>Translated_263_residues MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLAHQKNQTHAYQAVMNLALVIK KTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSYITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQL FLNYYFILDYYDLFAKKVTPVKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI LMKNLPTERNWRQLGAMLYHLTK >Mature_263_residues MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLAHQKNQTHAYQAVMNLALVIK KTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSYITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQL FLNYYFILDYYDLFAKKVTPVKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI LMKNLPTERNWRQLGAMLYHLTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31713; Mature: 31713
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLA CCCCHHHHCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCCCCCCCCCCC HQKNQTHAYQAVMNLALVIKKTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSY CCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCEEEECCCCEEECHHH ITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQLFLNYYFILDYYDLFAKKVTP HHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHEEEEEEEEECCCCCCEE LMKNLPTERNWRQLGAMLYHLTK EECCCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MKIAKKQIIDNDPNFDLMWQWNKKGELTLNQDELYFLYQVIYVFGIIDGNPNYENRYGLA CCCCHHHHCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHHEEECCCCCCCCCCCCC HQKNQTHAYQAVMNLALVIKKTFNFQLATTDLELMFNFIAFHERSTFFYGNSDVFFNRSY CCCCHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCEEEECCCCEEECHHH ITELREEHPRKYQIMQKLKEQLVKHSNQSVTNLLANWEQLFLNYYFILDYYDLFAKKVTP HHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC VKILVQDDLHHTHRLWLMNKIRAYFGHSFAFEFYDYKTPVSKVDLVISNYYIDTKDCPLI EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHEEEEEEEEECCCCCCEE LMKNLPTERNWRQLGAMLYHLTK EECCCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA