| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492740
Identifier: 116492740
GI number: 116492740
Start: 986030
End: 988075
Strand: Reverse
Name: 116492740
Synonym: PEPE_0977
Alternate gene names: NA
Gene position: 988075-986030 (Counterclockwise)
Preceding gene: 116492741
Following gene: 116492739
Centisome position: 53.92
GC content: 37.93
Gene sequence:
>2046_bases ATGAAAAAAGTTAAAGATTTGTTATTAGTGGCTTTTCTCGTAAGTTTCTGCTGGATAGCCACTGACGTAAAGGCTAGCTT GAAGCCATTATCTAATCTTGAAAATTTTCAGTGGGCCAATCAAGCAGTTACGCCAGCTGAAAATACCTTTATAATGCATA GTGGTGCTCGAACGAAGGTGACTCCTTTAAAGGGCGATGCTACCACGAATCGGCTATCAGTTGATCAGAAAATAAATGTG AGTCAGGCCCTCGTAGAAAATGTTGGGTTTTATCAAGGTAAATCTGTAAATTTGCTGGTAACGTTGAAACGAAATAAAAG TAATTTAAAGGGTGGATCACTAAGCTTTGCTAAGGATTATTTTTTTGGAATTGATATTGCTGGTGAGGTAATGGTTACTT ATCAATTTGTTGACGCCAATCAAAATCCTCTGACGATTAAAACAGCATTTAATTACTTCGGCCTTAATTCTAACAAGTAC ATTGGATACCAAGATTGCAATTCTGTGATTAGTGCAGTTTACGCTAATAACCCGACTAATATTAGGTATGAATCAGAAGA TCAATGGATGTATTTAAAAAATACTACAGTTGGGCTTCCGTGGCGAGATCCGCGCCAAAGTTTTGAAGTAGTTACTAAAC CCATTTTCCAAGTTACTTTTGTGGTACACAATAATGACAGTACACCTTCATCGTTAGTTTATTTAACTGAATTTTTAGCA AGGCCTGAGTCTGCGCCAGCTTATGCGGAAAGTAGCGATTTTAACCAAGCTAATAATGGCGTCTATTTGGCAGCTCAACA GACGGTACCTAGTACTAATAGTTTCACATCTGAGGTTAGTTTTAATTTGGAACATGTTTATAATAGTGAACAATATATTC CAGAACGGATTAAAGTTACTAATTTTGATGGGAAAGATGTAACGCAATACTTTGATTGGCGAATTGAGAATCAGAAAGTC TACATCAAGACTAGGCCAGCTGCTACTAGAGCAATAACCGATACTACGTTGCATTATAAAGTATATTTAAAGTGGCTTGA AGCTAAAAAAACTGTAGATCCAACTCGGGTTGTTAACGGAAAATTAGATTTACCGTTTGACGTATCAACGAACATCAATG GGCAAGCTGTAGGTAAAAGTAGCGCAGTTTCGACTGTAGACTATGTTGGTAGGGTGAATGTTGTTTTTTTAGCGGACAAT GGTTTCGAGGTACTTCGCGCTCGAGAAGTTAAAAGTGGCATTTTAACCACGAAATTTGACGTGACTGATATATATCCTGA AATTGCAGGTTACATTCCCATCAAGAATGATGCAGTTCAAGATACTGGTACATTCTTACCAGGAAATAAAACAATCATTC ACCGGTACCGTAAAGGCGAAAAACTTAGTTTTAAACTAAAAAATCTAGGAGATACACTCTATAGTTCACGATTTTCTAAT CAAAGCAAACTTACAGTTTCCTTTACGCACGAAGATGGAGCAAAAGTTAGATTGGTAGGAAACTGCGCGGGAGAAAAGCG AATACTAAAAGAGTATTCCAACGCTGCTCATCAGGTTGATGATGAAATTATATGCCAATTTCCAAAGTCATGGATTAATA AGAAGGTAGATTTTTACCTCGAAGATGACCAACATCAAATGTCGAATAAAGAAACTCGGATAATTAAACAAGAACGCGGA CCGGAGCTGTCATTACCTAGTAAAATCGACTTTGGTTCGCACGAAATTCCGCTGGAAATTACGGTCTGTTCACTAACTAG AGCAGAGTGGGTACATGTTAAAGATCGTAGTGAGCTTGACCACTACCCGTGGATTTTAAAGGTTCGAGAAGAACATCCAC TAACTAACCAAAACGACCAGAAGCTTATATCAAGGCTTTATTTTAAGGGTAACGTAATCAACGGAGAAAATCAGACGATT GGGCAAGATACTGGGAACTTAAATTTAGATTTAAGCCAGTATCTCCAACTGGTGCTAGAACCTACGGATCAAATTGGTAG TTACCATGGTGAATTAAGATGGACATTGGAAGATGCCCCCAACTGA
Upstream 100 bases:
>100_bases GATATTGCGATGGGGATGGTTTGGATTGGGTTAGGTTTGATTTGCTATACACTGATCAAAAATGGAATTAAAAAAATTCT TGTAGGTAAGAGGACGACTA
Downstream 100 bases:
>100_bases TTGATATTTTTTCAAGCAAGCTGAATCAGAAACTTCATGAGACTAGTTAACCAATCCTTTAGTTTTGGTTAGCTAGTTTT TTAGTTCCCAGAGATTATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 681; Mature: 681
Protein sequence:
>681_residues MKKVKDLLLVAFLVSFCWIATDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKVTPLKGDATTNRLSVDQKINV SQALVENVGFYQGKSVNLLVTLKRNKSNLKGGSLSFAKDYFFGIDIAGEVMVTYQFVDANQNPLTIKTAFNYFGLNSNKY IGYQDCNSVISAVYANNPTNIRYESEDQWMYLKNTTVGLPWRDPRQSFEVVTKPIFQVTFVVHNNDSTPSSLVYLTEFLA RPESAPAYAESSDFNQANNGVYLAAQQTVPSTNSFTSEVSFNLEHVYNSEQYIPERIKVTNFDGKDVTQYFDWRIENQKV YIKTRPAATRAITDTTLHYKVYLKWLEAKKTVDPTRVVNGKLDLPFDVSTNINGQAVGKSSAVSTVDYVGRVNVVFLADN GFEVLRAREVKSGILTTKFDVTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSN QSKLTVSFTHEDGAKVRLVGNCAGEKRILKEYSNAAHQVDDEIICQFPKSWINKKVDFYLEDDQHQMSNKETRIIKQERG PELSLPSKIDFGSHEIPLEITVCSLTRAEWVHVKDRSELDHYPWILKVREEHPLTNQNDQKLISRLYFKGNVINGENQTI GQDTGNLNLDLSQYLQLVLEPTDQIGSYHGELRWTLEDAPN
Sequences:
>Translated_681_residues MKKVKDLLLVAFLVSFCWIATDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKVTPLKGDATTNRLSVDQKINV SQALVENVGFYQGKSVNLLVTLKRNKSNLKGGSLSFAKDYFFGIDIAGEVMVTYQFVDANQNPLTIKTAFNYFGLNSNKY IGYQDCNSVISAVYANNPTNIRYESEDQWMYLKNTTVGLPWRDPRQSFEVVTKPIFQVTFVVHNNDSTPSSLVYLTEFLA RPESAPAYAESSDFNQANNGVYLAAQQTVPSTNSFTSEVSFNLEHVYNSEQYIPERIKVTNFDGKDVTQYFDWRIENQKV YIKTRPAATRAITDTTLHYKVYLKWLEAKKTVDPTRVVNGKLDLPFDVSTNINGQAVGKSSAVSTVDYVGRVNVVFLADN GFEVLRAREVKSGILTTKFDVTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSN QSKLTVSFTHEDGAKVRLVGNCAGEKRILKEYSNAAHQVDDEIICQFPKSWINKKVDFYLEDDQHQMSNKETRIIKQERG PELSLPSKIDFGSHEIPLEITVCSLTRAEWVHVKDRSELDHYPWILKVREEHPLTNQNDQKLISRLYFKGNVINGENQTI GQDTGNLNLDLSQYLQLVLEPTDQIGSYHGELRWTLEDAPN >Mature_681_residues MKKVKDLLLVAFLVSFCWIATDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKVTPLKGDATTNRLSVDQKINV SQALVENVGFYQGKSVNLLVTLKRNKSNLKGGSLSFAKDYFFGIDIAGEVMVTYQFVDANQNPLTIKTAFNYFGLNSNKY IGYQDCNSVISAVYANNPTNIRYESEDQWMYLKNTTVGLPWRDPRQSFEVVTKPIFQVTFVVHNNDSTPSSLVYLTEFLA RPESAPAYAESSDFNQANNGVYLAAQQTVPSTNSFTSEVSFNLEHVYNSEQYIPERIKVTNFDGKDVTQYFDWRIENQKV YIKTRPAATRAITDTTLHYKVYLKWLEAKKTVDPTRVVNGKLDLPFDVSTNINGQAVGKSSAVSTVDYVGRVNVVFLADN GFEVLRAREVKSGILTTKFDVTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSN QSKLTVSFTHEDGAKVRLVGNCAGEKRILKEYSNAAHQVDDEIICQFPKSWINKKVDFYLEDDQHQMSNKETRIIKQERG PELSLPSKIDFGSHEIPLEITVCSLTRAEWVHVKDRSELDHYPWILKVREEHPLTNQNDQKLISRLYFKGNVINGENQTI GQDTGNLNLDLSQYLQLVLEPTDQIGSYHGELRWTLEDAPN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77158; Mature: 77158
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVKDLLLVAFLVSFCWIATDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEE TPLKGDATTNRLSVDQKINVSQALVENVGFYQGKSVNLLVTLKRNKSNLKGGSLSFAKDY EECCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEHHHE FFGIDIAGEVMVTYQFVDANQNPLTIKTAFNYFGLNSNKYIGYQDCNSVISAVYANNPTN EEEEEECCEEEEEEEEECCCCCCEEEEEEEEEECCCCCCEECHHHHHHHHHHHHCCCCCC IRYESEDQWMYLKNTTVGLPWRDPRQSFEVVTKPIFQVTFVVHNNDSTPSSLVYLTEFLA EEECCCCCEEEEECCEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHH RPESAPAYAESSDFNQANNGVYLAAQQTVPSTNSFTSEVSFNLEHVYNSEQYIPERIKVT CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEHHCCCCCCCCCCEEEEE NFDGKDVTQYFDWRIENQKVYIKTRPAATRAITDTTLHYKVYLKWLEAKKTVDPTRVVNG CCCCCHHHHEECEEECCCEEEEEECCCCCEEEECCEEEEEEEEEEHHHHCCCCCCEEECC KLDLPFDVSTNINGQAVGKSSAVSTVDYVGRVNVVFLADNGFEVLRAREVKSGILTTKFD CCCCCEECCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCEEEEEC VTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSN HHHHCHHHHCEEECCCCCCCCCCCCCCCCHHEEEEECCCCEEEEEEHHHCHHHHHHHCCC QSKLTVSFTHEDGAKVRLVGNCAGEKRILKEYSNAAHQVDDEIICQFPKSWINKKVDFYL CCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCCEEEEE EDDQHQMSNKETRIIKQERGPELSLPSKIDFGSHEIPLEITVCSLTRAEWVHVKDRSELD CCCHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCC HYPWILKVREEHPLTNQNDQKLISRLYFKGNVINGENQTIGQDTGNLNLDLSQYLQLVLE CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEHHHHHHHHHC PTDQIGSYHGELRWTLEDAPN CCHHHCCCCCEEEEEECCCCC >Mature Secondary Structure MKKVKDLLLVAFLVSFCWIATDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEE TPLKGDATTNRLSVDQKINVSQALVENVGFYQGKSVNLLVTLKRNKSNLKGGSLSFAKDY EECCCCCCCCEEECCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCEEHHHE FFGIDIAGEVMVTYQFVDANQNPLTIKTAFNYFGLNSNKYIGYQDCNSVISAVYANNPTN EEEEEECCEEEEEEEEECCCCCCEEEEEEEEEECCCCCCEECHHHHHHHHHHHHCCCCCC IRYESEDQWMYLKNTTVGLPWRDPRQSFEVVTKPIFQVTFVVHNNDSTPSSLVYLTEFLA EEECCCCCEEEEECCEEECCCCCHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHH RPESAPAYAESSDFNQANNGVYLAAQQTVPSTNSFTSEVSFNLEHVYNSEQYIPERIKVT CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEHHCCCCCCCCCCEEEEE NFDGKDVTQYFDWRIENQKVYIKTRPAATRAITDTTLHYKVYLKWLEAKKTVDPTRVVNG CCCCCHHHHEECEEECCCEEEEEECCCCCEEEECCEEEEEEEEEEHHHHCCCCCCEEECC KLDLPFDVSTNINGQAVGKSSAVSTVDYVGRVNVVFLADNGFEVLRAREVKSGILTTKFD CCCCCEECCCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCEEEEEC VTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSN HHHHCHHHHCEEECCCCCCCCCCCCCCCCHHEEEEECCCCEEEEEEHHHCHHHHHHHCCC QSKLTVSFTHEDGAKVRLVGNCAGEKRILKEYSNAAHQVDDEIICQFPKSWINKKVDFYL CCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHCCHHHCCCCEEEEE EDDQHQMSNKETRIIKQERGPELSLPSKIDFGSHEIPLEITVCSLTRAEWVHVKDRSELD CCCHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECCCCCCC HYPWILKVREEHPLTNQNDQKLISRLYFKGNVINGENQTIGQDTGNLNLDLSQYLQLVLE CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEHHHHHHHHHC PTDQIGSYHGELRWTLEDAPN CCHHHCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA