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The map label for this gene is recU

Identifier: 116492697

GI number: 116492697

Start: 934883

End: 935488

Strand: Reverse

Name: recU

Synonym: PEPE_0932

Alternate gene names: 116492697

Gene position: 935488-934883 (Counterclockwise)

Preceding gene: 116492709

Following gene: 116492696

Centisome position: 51.05

GC content: 34.65

Gene sequence:

>606_bases
TTGAAATTTAATTATCCAACTGGGTCAAAAGCAACCACTCCTAAAATGAGCCAAGCCAAGGTTAGCATGCCTCCTATTTA
CGGTAAAAGAGGTATGTCCTTAGAAGAAGAACTTAATGAAAGTAACGCTTATTATCTAAGCCACGGGGTTGCTGTTATTC
ATAAAAAACCAACACCAATTCAAATTGTGAAGGTTGATTATCCTAAACGCAGCGCGGCACAGATTAAAGAGGCTTACTTT
AGTAAGGCTTCCACTACTGACTATAATGGAGTATATCGAGGTAAGTATATCGATTTTGACGCAAAGGAAACAACCAATTC
TACTTCCTTTCCTTTAAGTAATTTCCATGAGCATCAAATTAATCATATGAAGGATTGCGAGAAAGTTGGTGGAATTTGCT
TTACAATTATAAAGTTTGTAAAATTGAACAAGATATTTCTACTGAAGACGAAAGATCTTTTTCAGTTTTGGGATAGTAAA
GAAAATGGTGGTCGGAAATCGATTCCCCTTTCGGTATTTGAAGAACAAGGATATCAATTGGAATACCAAATGAATCCTTT
AATTCCATACCTAAAAGCGGTTGATAAAATTATAGAGAATTTATAA

Upstream 100 bases:

>100_bases
AAATTTTGTTTTATTTTCTATATGATATACGCTTTTTAAACTATTTGTAATCTATCAAACTAAATACCATAGTATAATAG
ATGAACAGGAGGACGTATCT

Downstream 100 bases:

>100_bases
AAAATCGATTTTCTAACAGCAAGGAGATTATCTATGAACAACGGAAATCAGTACCAAAATCGACCCATGCGACGAACGCA
ACATTCGAAAATGGGTAAAC

Product: Holliday junction-specific endonuclease

Products: NA

Alternate protein names: Recombination protein U homolog

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKFNYPTGSKATTPKMSQAKVSMPPIYGKRGMSLEEELNESNAYYLSHGVAVIHKKPTPIQIVKVDYPKRSAAQIKEAYF
SKASTTDYNGVYRGKYIDFDAKETTNSTSFPLSNFHEHQINHMKDCEKVGGICFTIIKFVKLNKIFLLKTKDLFQFWDSK
ENGGRKSIPLSVFEEQGYQLEYQMNPLIPYLKAVDKIIENL

Sequences:

>Translated_201_residues
MKFNYPTGSKATTPKMSQAKVSMPPIYGKRGMSLEEELNESNAYYLSHGVAVIHKKPTPIQIVKVDYPKRSAAQIKEAYF
SKASTTDYNGVYRGKYIDFDAKETTNSTSFPLSNFHEHQINHMKDCEKVGGICFTIIKFVKLNKIFLLKTKDLFQFWDSK
ENGGRKSIPLSVFEEQGYQLEYQMNPLIPYLKAVDKIIENL
>Mature_201_residues
MKFNYPTGSKATTPKMSQAKVSMPPIYGKRGMSLEEELNESNAYYLSHGVAVIHKKPTPIQIVKVDYPKRSAAQIKEAYF
SKASTTDYNGVYRGKYIDFDAKETTNSTSFPLSNFHEHQINHMKDCEKVGGICFTIIKFVKLNKIFLLKTKDLFQFWDSK
ENGGRKSIPLSVFEEQGYQLEYQMNPLIPYLKAVDKIIENL

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECU_PEDPA (Q03FN2)

Other databases:

- EMBL:   CP000422
- RefSeq:   YP_804432.1
- ProteinModelPortal:   Q03FN2
- SMR:   Q03FN2
- STRING:   Q03FN2
- GeneID:   4417744
- GenomeReviews:   CP000422_GR
- KEGG:   ppe:PEPE_0932
- NMPDR:   fig|278197.10.peg.829
- eggNOG:   COG3331
- HOGENOM:   HBG571967
- OMA:   GHYIDFE
- ProtClustDB:   PRK02234
- BioCyc:   PPEN278197:PEPE_0932-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00130
- InterPro:   IPR004612
- InterPro:   IPR011335
- PIRSF:   PIRSF037785
- TIGRFAMs:   TIGR00648

Pfam domain/function: PF03838 RecU; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 23026; Mature: 23026

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFNYPTGSKATTPKMSQAKVSMPPIYGKRGMSLEEELNESNAYYLSHGVAVIHKKPTPI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCEEEEECCCCCE
QIVKVDYPKRSAAQIKEAYFSKASTTDYNGVYRGKYIDFDAKETTNSTSFPLSNFHEHQI
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCHHHHHH
NHMKDCEKVGGICFTIIKFVKLNKIFLLKTKDLFQFWDSKENGGRKSIPLSVFEEQGYQL
HHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHCCCCCCCCCCCCHHEECCCCCEE
EYQMNPLIPYLKAVDKIIENL
EEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFNYPTGSKATTPKMSQAKVSMPPIYGKRGMSLEEELNESNAYYLSHGVAVIHKKPTPI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCEEEEECCCCCE
QIVKVDYPKRSAAQIKEAYFSKASTTDYNGVYRGKYIDFDAKETTNSTSFPLSNFHEHQI
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCEECCEEECCCCCCCCCCCCCCCCCHHHHHH
NHMKDCEKVGGICFTIIKFVKLNKIFLLKTKDLFQFWDSKENGGRKSIPLSVFEEQGYQL
HHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHCCCCCCCCCCCCHHEECCCCCEE
EYQMNPLIPYLKAVDKIIENL
EEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA