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The map label for this gene is int [H]

Identifier: 116492513

GI number: 116492513

Start: 780798

End: 781937

Strand: Reverse

Name: int [H]

Synonym: PEPE_0745

Alternate gene names: 116492513

Gene position: 781937-780798 (Counterclockwise)

Preceding gene: 116492514

Following gene: 116492512

Centisome position: 42.67

GC content: 31.4

Gene sequence:

>1140_bases
ATGTCAATAACTCAACGAAAAAATGGAACATATGAAGTATCTATTAGCTGGTACGATTCACTTGGTAAACGCCGTACTAA
ATCAAAACGAGGGTTTAAAACTAAACCAGAAGCCGTATTAGGTGAAGCTAAATTAAGGCTTGAATATGAAGAAGTTAGTG
TTCGTGAAAAAGTTGATCAGCAAGATACCTTCGCTGAATATTTTAAAAACTGGTACATTTTCTACAAAAAGCCAAAGGTT
AGCAAAGTAACCCTCAATCGTTACCAATATACTTATAATGTGATTAACGAATACTTTGGTAATAAATTACTAAAGGATAT
CACTAGAGCTAATTATCAAAAATTCATCGTTAAATATGGTCAAAACCACTCTCCTAACACCATGAAAATGATTAATAATT
GTATTAAGGCGTGTGTTAAAAATGCTGTTTATGATGAAGAAATCAAGAAAGATTTTACTTATAATATTGAATTGATTTCA
AATAGAGATAATGTAGTACAGGTTGAATATTTGAATGTTGCTGAAATTAAAGCGCTATTGAATAGTACTATATCTAAGCT
CAACCCTAGATATACTTCTAACTATATGATTGTTACGGCTATTTTAACTGGTGCTCGTTTATCTGAAATTGCTGGATTAA
CGTGGAATGATATTAATTTTAATTTCAATACTATTAATATCAACAAATCCTATGATTATTTCGCAAAATCATTCAAGCCT
ACTAAAAATAAAAGTTCTAACCGAATAATTAAAATCAATAATACTTTATGCGATGTTTTAAAAGAATTGAGAACCAACAA
TACTGACTTAGTTTTTAAAAACAAGCGTGGACTTATCCCCACCTCTAACGCTGTAAATAAGGCTCTAAGAGCTCGATTAG
AAGAATTGAACATAAATAGACGTAACTTTCATTTCCATTCTCTAAGGCACTCTCACGTAGCCTTTTTACTATCACAAGGA
ATAGATATTTATCCTATTGCTCAAAGATTAGGACATTCAGATATTACTACCACAACCAGAACATACGCTTATTTAATTGA
AGAATATAAAGATAAAAATGATGCAATCATCATTGCTGGGTTAGATAAGCTTTCAGCTGAAAAAGCGCCTACCAAAGTGC
CTGCCAAGTCCGACATATAG

Upstream 100 bases:

>100_bases
AGATGTGACTTAACAAAACAAAACTACTCTTGAGTAGCTCTTTTAATATACCCAATTTTACCATTAAAAGACTGCGTATC
AAGAGAACGGAGGTTCGATA

Downstream 100 bases:

>100_bases
CAACTAACTATAAACAATTGTAGATTAATGAAAATATCCATAAGTGTTGATATAACAGCATTCTTACAATATTTAGATTA
ACCGTATCGAACTCTATTTC

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSITQRKNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVSVREKVDQQDTFAEYFKNWYIFYKKPKV
SKVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYGQNHSPNTMKMINNCIKACVKNAVYDEEIKKDFTYNIELIS
NRDNVVQVEYLNVAEIKALLNSTISKLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKP
TKNKSSNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINRRNFHFHSLRHSHVAFLLSQG
IDIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAIIIAGLDKLSAEKAPTKVPAKSDI

Sequences:

>Translated_379_residues
MSITQRKNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVSVREKVDQQDTFAEYFKNWYIFYKKPKV
SKVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYGQNHSPNTMKMINNCIKACVKNAVYDEEIKKDFTYNIELIS
NRDNVVQVEYLNVAEIKALLNSTISKLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKP
TKNKSSNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINRRNFHFHSLRHSHVAFLLSQG
IDIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAIIIAGLDKLSAEKAPTKVPAKSDI
>Mature_378_residues
SITQRKNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVSVREKVDQQDTFAEYFKNWYIFYKKPKVS
KVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYGQNHSPNTMKMINNCIKACVKNAVYDEEIKKDFTYNIELISN
RDNVVQVEYLNVAEIKALLNSTISKLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKPT
KNKSSNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINRRNFHFHSLRHSHVAFLLSQGI
DIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAIIIAGLDKLSAEKAPTKVPAKSDI

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43983; Mature: 43852

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSITQRKNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVSVREKVDQ
CCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHCCHHEEEEHHHHHHHHHHCH
QDTFAEYFKNWYIFYKKPKVSKVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYG
HHHHHHHHCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QNHSPNTMKMINNCIKACVKNAVYDEEIKKDFTYNIELISNRDNVVQVEYLNVAEIKALL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCHHHHHHHH
NSTISKLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKP
HHHHHHCCCCCCCCEEEEEEECCCHHHHHHCCCEEECCCEEEEEEEECCCHHHHHHCCCC
TKNKSSNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINR
CCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
RNFHFHSLRHSHVAFLLSQGIDIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAIIIAG
CCEEHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
LDKLSAEKAPTKVPAKSDI
CCHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SITQRKNGTYEVSISWYDSLGKRRTKSKRGFKTKPEAVLGEAKLRLEYEEVSVREKVDQ
CCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHCCHHEEEEHHHHHHHHHHCH
QDTFAEYFKNWYIFYKKPKVSKVTLNRYQYTYNVINEYFGNKLLKDITRANYQKFIVKYG
HHHHHHHHCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QNHSPNTMKMINNCIKACVKNAVYDEEIKKDFTYNIELISNRDNVVQVEYLNVAEIKALL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCHHHHHHHH
NSTISKLNPRYTSNYMIVTAILTGARLSEIAGLTWNDINFNFNTININKSYDYFAKSFKP
HHHHHHCCCCCCCCEEEEEEECCCHHHHHHCCCEEECCCEEEEEEEECCCHHHHHHCCCC
TKNKSSNRIIKINNTLCDVLKELRTNNTDLVFKNKRGLIPTSNAVNKALRARLEELNINR
CCCCCCCCEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC
RNFHFHSLRHSHVAFLLSQGIDIYPIAQRLGHSDITTTTRTYAYLIEEYKDKNDAIIIAG
CCEEHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEE
LDKLSAEKAPTKVPAKSDI
CCHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]