| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is uvrA [H]
Identifier: 116492252
GI number: 116492252
Start: 499694
End: 502537
Strand: Direct
Name: uvrA [H]
Synonym: PEPE_0449
Alternate gene names: 116492252
Gene position: 499694-502537 (Clockwise)
Preceding gene: 116492251
Following gene: 116492253
Centisome position: 27.27
GC content: 40.15
Gene sequence:
>2844_bases TTGGCAAATGATAAAATTGTTATCCACGGTGCACGAGCACATAATTTAAAGAATATTGATGTTACCATTCCACGCGATAA ACTAGTGGTGGTGACAGGGTTATCTGGATCAGGAAAGAGTTCATTGGCTTTTGATACCCTCTATGCTGAAGGTCAACGAC GCTACGTAGAAAGTTTGTCAGCGTATGCTCGTCAATTTTTAGGGCAAATGGATAAGCCAGATGTTGATTCAATTGATGGA CTTAGTCCGGCTATTTCGATTGATCAAAAGACAACTTCTAAAAATCCTCGTTCAACAGTCGGGACCGTAACCGAAATTAA TGATTATTTAAGACTATTATGGGCGCGAGTTGGTCAACCAATCTGTCCCAATGATGGTACACCGATTACCAGTCAGACGG TCGAACAGATGGTGAATCGAGTTTTGGATTTGCCGGAACGTTCCAAGGTGCAAATCATCTCACCGATCGTCCGTGCTAAA AAAGGCCAACATAAAAAGGTTTTTGAAAAAATCAAACGTGAAGGCTTTGTGCGGGTACGAGTAGATGACGAAACCATGGA TGTTGAAGAAGTACCAGAATTGGATAAGAACAAAGTTCACACCATTGATATTGTGGTCGACCGTGTGGTGGTTAAAGACG GAATTCGGTCTCGTTTATTTGATTCATTTGAAGCAGCTTTACGCCTCAGTAAGGGTTATGCTACAGCAGATGTGATTGGT GGCGAACCAATCTTGTTCTCAGAACATTATTCCTGTCCGGTTTGTGGGTTCACAGTGGGAGAACTTGAACCCCGACTATT TTCATTTAATGCCCCTTTTGGAGCATGTCCTGAATGTGATGGATTAGGAATTAAATTGGAAGTGGATGAAGATTTAGTCA TTCCGGATCCATCTAAGACGTTACGTGAAGGAGCAATTGCACCTTGGAATCCGATTAGTTCGCAATATTATCCAACCTTA CTAGAACAAGCTGCTAAAAGTTTTGGAATTGATATGGATACTCCTTTTGAGGATTTACCTAAAGCAGATCGCCAGCTCGT TTTATATGGTTCTAAAGGTAAGAAATTCCATTTCCACTATGAAAATGATTTTGGTGGAGTTCGGGATGTGGATTCCGTAT TTGAAGGTGTAATGGTTAACATTGATCGTCGCTATCATGAAACTAATAGTGATTTCACGCGAGATCAAATGCGGTTATAT ATGCGCGAATTAACGTGCCAAACTTGTCATGGTTACCGTTTGAATCGAAAAGCTTTATCAGTAAAAATTGATGGAAAGCA TATTGCCGAAATTTCAGCTTTACCCATCGATAGTGCCATGGAATTTTTCGGTAATTTAAACTTTTCGGAGCAGGATACAG CTGTTGCCACTCCAATCTTAAAAGAAATCAAGGACCGTTTGAATTTCTTACGTAACGTGGGATTGGAGTATCTAACTTTG AGTCGCTCGGCTCGAACACTTTCAGGTGGGGAAGCCCAACGGATTCGTTTGGCGACTCAAATTGGCTCGAATTTATCTGG TGTACTATATATTTTGGATGAACCTTCAATTGGTTTACATCAAAGGGATAACAATCGATTAATTAGTTCCCTTAAAAAGA TGCGGGATTTAGGTAACACGCTAGTAGTTGTTGAACATGATGAAGATACGATGTGGGCTGCTGATTATCTTATTGATATT GGACCAGGAGCTGGTGAAAATGGCGGTGAAGTCATGGCAGCTGGTACTCCTAAGCAAGTGGCTAAAAGTCGTAAATCACT GACGGGTAAGTATCTATCCGGAAAGAAATTTATTCCAGTTCCAGAAACTAGGCGTACGGGTAATGGTCAATCTATTAAAT TAAAAGGGGTACAAGAAAATAACCTTAAAAATATTGATGTTGACTTCCCATTAGGTGAATTTGTCGCTGTAACGGGAGTT TCTGGCTCAGGTAAATCTACGTTAGTCAATATGGTTTTAAAACGAGTTTTGGCTCAAAAATTAAACCATAATTCTGAAAA ACCAGGTAAATATAAATCGGTTAGTGGTATTAAAAATATTGAAAAAGTTATCAATATTGACCAATCTCCAATTGGCCGGA CCCCACGAAGTAATCCGGCAACTTATACGAGCGTTTTCGATGATATAAGAGGCTTATTTGCTCAGACTAATGAAGCTAAA CTCCGAGGATATACGAAGGGTCGTTTTAGTTTTAACGTCAAGGGTGGACGCTGTGAAGCATGTAAGGGTGACGGAATTCT AAAAATTGAGATGAATTTCTTGCCAGATGTTTACGTTCCTTGTGAGGTCTGTCATGGAACACGTTATAACTCAGAAACAC TTGAAGTTAAGTACAAAGGCAAGACAATTGCTGATATCTTGGATATGACGGTGGAAGAAGCAACAGATTTCTTTGCTCCC ATCCCTAAGATTGCTCGTAAACTTCAAACCATTATTGATGTAGGATTGGGCTACGTACATTTAGGACAATCAGCTACTAC CCTATCTGGTGGTGAAGCGCAACGTATGAAGTTAGCTTCCGAACTACACAAAAAAGCGAATGGTAAGAACTTCTATATCC TAGATGAACCAACTACTGGTTTGCATACAGACGACATCAAACGTTTGTTAGATGTATTACAACGTTTGGTAGATAATGGT AATACTGTTTTAGTAATCGAACATAATTTAGATGTAATTAAAACTGCCGATCACTTGATTGATCTGGGTCCTGAAGGGGG CGCTGGTGGTGGACAAGTGGTGGCTGTTGGTACACCGGAAGCCATTGCTGCGGTACCTGAAAGCTATACTGGTAAATATT TGAAAGAAGTTCTGGAGCGTGCTCAAGAACTTAGTCAGAAATAA
Upstream 100 bases:
>100_bases AATGCGAGCGGCTGCTAAGAAGCTAGACTTCGAAAAAGCAGCTAACTTGCGAGATACCGTTTTAGAATTAAAAGCACAGA TTGGTTAGGAGGCCTCTTTT
Downstream 100 bases:
>100_bases TACAAAAGGGGCAATTTGTGCTCCTTTTTATATAACTTAAAAAAGACACGCCCGGATGTGTTATACTGGAGTAGCTACCT TTATAGGAGGAATTAATAAT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 947; Mature: 946
Protein sequence:
>947_residues MANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDSIDG LSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQPICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAK KGQHKKVFEKIKREGFVRVRVDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIG GEPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKTLREGAIAPWNPISSQYYPTL LEQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHYENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLY MRELTCQTCHGYRLNRKALSVKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTL SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNTLVVVEHDEDTMWAADYLIDI GPGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPVPETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGV SGSGKSTLVNMVLKRVLAQKLNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKGKTIADILDMTVEEATDFFAP IPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLASELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNG NTVLVIEHNLDVIKTADHLIDLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK
Sequences:
>Translated_947_residues MANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDSIDG LSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQPICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAK KGQHKKVFEKIKREGFVRVRVDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIG GEPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKTLREGAIAPWNPISSQYYPTL LEQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHYENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLY MRELTCQTCHGYRLNRKALSVKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTL SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNTLVVVEHDEDTMWAADYLIDI GPGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPVPETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGV SGSGKSTLVNMVLKRVLAQKLNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKGKTIADILDMTVEEATDFFAP IPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLASELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNG NTVLVIEHNLDVIKTADHLIDLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK >Mature_946_residues ANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDSIDGL SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQPICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAKK GQHKKVFEKIKREGFVRVRVDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIGG EPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKTLREGAIAPWNPISSQYYPTLL EQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHYENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLYM RELTCQTCHGYRLNRKALSVKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTLS RSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNTLVVVEHDEDTMWAADYLIDIG PGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPVPETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGVS GSGKSTLVNMVLKRVLAQKLNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAKL RGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKGKTIADILDMTVEEATDFFAPI PKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLASELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNGN TVLVIEHNLDVIKTADHLIDLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=57.2340425531915, Blast_Score=1084, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104540; Mature: 104408
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS CCCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHH AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQP HHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHCCC ICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAKKGQHKKVFEKIKREGFVRVR CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEE VDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIG ECCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GEPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKT CCEEEEECCCCCCCCCCCHHCCCCCEEEECCCCCCCCCCCCCEEEEECCCCEECCCCHHH LREGAIAPWNPISSQYYPTLLEQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHY HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEEECCCCCEEEEEE ENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLYMRELTCQTCHGYRLNRKALS CCCCCCCCCHHHHHHHHEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCEEEE VKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTL EEECCCEEEHEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNT CCCCCCCCCCCHHHEEEHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCE LVVVEHDEDTMWAADYLIDIGPGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPV EEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEECCC PETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGVSGSGKSTLVNMVLKRVLAQK CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH LNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKG CCCEECCEEEEEECCCEECCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCEEEEEECC KTIADILDMTVEEATDFFAPIPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLAS CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH ELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNGNTVLVIEHNLDVIKTADHLI HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHE DLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK ECCCCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure ANDKIVIHGARAHNLKNIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS CCCCEEEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHH AYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQP HHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHCCC ICPNDGTPITSQTVEQMVNRVLDLPERSKVQIISPIVRAKKGQHKKVFEKIKREGFVRVR CCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEE VDDETMDVEEVPELDKNKVHTIDIVVDRVVVKDGIRSRLFDSFEAALRLSKGYATADVIG ECCCCCCHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC GEPILFSEHYSCPVCGFTVGELEPRLFSFNAPFGACPECDGLGIKLEVDEDLVIPDPSKT CCEEEEECCCCCCCCCCCHHCCCCCEEEECCCCCCCCCCCCCEEEEECCCCEECCCCHHH LREGAIAPWNPISSQYYPTLLEQAAKSFGIDMDTPFEDLPKADRQLVLYGSKGKKFHFHY HHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEEECCCCCEEEEEE ENDFGGVRDVDSVFEGVMVNIDRRYHETNSDFTRDQMRLYMRELTCQTCHGYRLNRKALS CCCCCCCCCHHHHHHHHEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEECCEEEE VKIDGKHIAEISALPIDSAMEFFGNLNFSEQDTAVATPILKEIKDRLNFLRNVGLEYLTL EEECCCEEEHEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE SRSARTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNNRLISSLKKMRDLGNT CCCCCCCCCCCHHHEEEHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCE LVVVEHDEDTMWAADYLIDIGPGAGENGGEVMAAGTPKQVAKSRKSLTGKYLSGKKFIPV EEEEECCCCCEEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEECCC PETRRTGNGQSIKLKGVQENNLKNIDVDFPLGEFVAVTGVSGSGKSTLVNMVLKRVLAQK CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH LNHNSEKPGKYKSVSGIKNIEKVINIDQSPIGRTPRSNPATYTSVFDDIRGLFAQTNEAK HCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH LRGYTKGRFSFNVKGGRCEACKGDGILKIEMNFLPDVYVPCEVCHGTRYNSETLEVKYKG CCCEECCEEEEEECCCEECCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCEEEEEECC KTIADILDMTVEEATDFFAPIPKIARKLQTIIDVGLGYVHLGQSATTLSGGEAQRMKLAS CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH ELHKKANGKNFYILDEPTTGLHTDDIKRLLDVLQRLVDNGNTVLVIEHNLDVIKTADHLI HHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHE DLGPEGGAGGGQVVAVGTPEAIAAVPESYTGKYLKEVLERAQELSQK ECCCCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12566566 [H]