Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
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Accession | NC_008525 |
Length | 1,832,387 |
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The map label for this gene is trxA [H]
Identifier: 116492176
GI number: 116492176
Start: 419777
End: 420106
Strand: Direct
Name: trxA [H]
Synonym: PEPE_0373
Alternate gene names: 116492176
Gene position: 419777-420106 (Clockwise)
Preceding gene: 116492175
Following gene: 116492177
Centisome position: 22.91
GC content: 36.06
Gene sequence:
>330_bases ATGGCCGTTACAATTAATCAAGATAACTTAACTGACGTGACACAATCTGGACTAACCATTGTGGACTTTTGGGCTCCTTG GTGTGGTCCTTGTAAAATGATGGAACCAGCCTTAGAGAGTTTGGAAAAAACTTATGGAGATCAAATCCAGTTTGCCAAAA TGAATGTGGATAACAATCAAGCAGTAGCAGAATCTTTTAAAATTATGAGCATTCCAGCATTGGTTTTGTTTAAAGATGGA AAAGCCATTGAAAAAGTGACGGGGTATTATCCTGAAGCAAAATTAGCCAAATACTTAGAAAAGAAGATATCAGAAAATGA ACCAAAGTAA
Upstream 100 bases:
>100_bases CTTAGCCTTTTTAATTACAATTGGAATTCACTACGCCAAAAGACCGGCAAAAAAACAATGATATAATTTATGGTAACAAG TTAGTAAAAAGGAGACAGAA
Downstream 100 bases:
>100_bases AACAGCGATTGTGATTGATAGTTCAGCCAATATAGCTCCGGAAATCGTGCGTAAGTATCATTTTACGATCGTTAATCAAC CGGTTATGTTTGGTAAACAT
Product: Thiol-disulfide isomerase and thioredoxin
Products: NA
Alternate protein names: Trx [H]
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MAVTINQDNLTDVTQSGLTIVDFWAPWCGPCKMMEPALESLEKTYGDQIQFAKMNVDNNQAVAESFKIMSIPALVLFKDG KAIEKVTGYYPEAKLAKYLEKKISENEPK
Sequences:
>Translated_109_residues MAVTINQDNLTDVTQSGLTIVDFWAPWCGPCKMMEPALESLEKTYGDQIQFAKMNVDNNQAVAESFKIMSIPALVLFKDG KAIEKVTGYYPEAKLAKYLEKKISENEPK >Mature_108_residues AVTINQDNLTDVTQSGLTIVDFWAPWCGPCKMMEPALESLEKTYGDQIQFAKMNVDNNQAVAESFKIMSIPALVLFKDGK AIEKVTGYYPEAKLAKYLEKKISENEPK
Specific function: Component of the thioredoxin-thioredoxin reductase system. Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=85, Percent_Identity=31.7647058823529, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI87082331, Length=95, Percent_Identity=37.8947368421053, Blast_Score=82, Evalue=9e-18, Organism=Escherichia coli, GI1788936, Length=85, Percent_Identity=31.7647058823529, Blast_Score=78, Evalue=1e-16, Organism=Escherichia coli, GI87081747, Length=108, Percent_Identity=31.4814814814815, Blast_Score=65, Evalue=1e-12, Organism=Caenorhabditis elegans, GI212646193, Length=97, Percent_Identity=37.1134020618557, Blast_Score=65, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6323072, Length=81, Percent_Identity=43.2098765432099, Blast_Score=75, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6319925, Length=101, Percent_Identity=39.6039603960396, Blast_Score=75, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6321648, Length=76, Percent_Identity=42.1052631578947, Blast_Score=73, Evalue=9e-15, Organism=Drosophila melanogaster, GI24639826, Length=100, Percent_Identity=36, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI17648013, Length=89, Percent_Identity=37.0786516853933, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI24583090, Length=89, Percent_Identity=37.0786516853933, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI28573567, Length=91, Percent_Identity=29.6703296703297, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI17530795, Length=71, Percent_Identity=33.8028169014084, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 12222; Mature: 12091
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTINQDNLTDVTQSGLTIVDFWAPWCGPCKMMEPALESLEKTYGDQIQFAKMNVDNNQ CEEEECCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH AVAESFKIMSIPALVLFKDGKAIEKVTGYYPEAKLAKYLEKKISENEPK HHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure AVTINQDNLTDVTQSGLTIVDFWAPWCGPCKMMEPALESLEKTYGDQIQFAKMNVDNNQ EEEECCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH AVAESFKIMSIPALVLFKDGKAIEKVTGYYPEAKLAKYLEKKISENEPK HHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA