| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is trxB [C]
Identifier: 116492169
GI number: 116492169
Start: 412199
End: 413185
Strand: Direct
Name: trxB [C]
Synonym: PEPE_0366
Alternate gene names: 116492169
Gene position: 412199-413185 (Clockwise)
Preceding gene: 116492166
Following gene: 116492171
Centisome position: 22.5
GC content: 39.92
Gene sequence:
>987_bases ATGACGGAAATGTATGATATTACGATTATTGGTGGGGGTCCAGCCGGTTTATTTGCTGGATTTTATGCTGGAATGCGCAC TGCCAAAACACAAATTATTGAAAGCCTTCCACAAGCTGGTGGACAAGTTGCTGCACTTTATCCAGAAAAAATGATTTACG ATGTCGGTGGTTATGCTGGAATAAAAGCAGCTAATTTGGCTAAAGAACTTGAAAAACAAACGCGCTTGGTCGGAACTGAA ATTCGTCTTAACGAAACCGTTGTTGATATTCAAGCTCAAGCTGATTTTTACCATGTTAAAACTAATCGGAATGAATACGA TACCCGAGCAATTCTTTTAGCAACTGGTAATGGAGCATTTAATCCGCGAAAGTTAGCTGTGGAAGGGTTGGACCATTTAG AAGATAAAAAAATCTACTATCATATGCCCGATGTTGAACATTTTGAAAATCAGGATATTTTAGTGGCAGGTGGCGGTGAC TCGGCCATTGATATTGCGCTCATGCTGGAACCAATTGCTAAAAGTATCAGTTTGGTGCATCGTCGGCAGCAATTTAGGGG GATGGAACGGAATGTACAACACCTCCAAGAATCGACGGTTAAAGTGATGACACCGTATTTAATTAATGGTGTTCGCGAGG CTGTCGAAGGAATCGATGTCGATTTGAAAGAAATTGGTACCGAAGCCTTAAAAGCTACCCATTTTGATAAACTAATTGTT AACTACGGATTTACCTCTAGTAATAAAATTATCAAAGGATGGGAAATCGATTTGACCCAAGAACATCGTATGTTTGCCGT CGATAGCCTGATGCATACAAATATGAAAAATATTTATGCGATTGGTGATGGGGTAGAGTATCCTGGAAAGTTAAGACTAA TTGCAACCGCCTTTGGTGAAGGCCCGATTGCGGTAAATCAAATTATGAACGACTTATATCCAGGCAAACGTGGACCTGTT CATAGTACATCCATGTTTGAAAAATAA
Upstream 100 bases:
>100_bases GCTTAAAAGACAATCCCAAGCATTCTTTTTTATTGAAGAAGCTGGTAATATATTTGGTGGATTATAAAAATGAAATTGAT TTAATAAGGGAGCACAGGCA
Downstream 100 bases:
>100_bases TCTGAATATATAAAAATGCAGTGAACTTAAAAACTAAGTTCACTGCATTTTTGTTAACTGCCGTTGGCATCTGGATTTGT AATTTTAATTCGGTTTTCAC
Product: thioredoxin reductase
Products: NA
Alternate protein names: FNR; Fd-NADP+ reductase
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MTEMYDITIIGGGPAGLFAGFYAGMRTAKTQIIESLPQAGGQVAALYPEKMIYDVGGYAGIKAANLAKELEKQTRLVGTE IRLNETVVDIQAQADFYHVKTNRNEYDTRAILLATGNGAFNPRKLAVEGLDHLEDKKIYYHMPDVEHFENQDILVAGGGD SAIDIALMLEPIAKSISLVHRRQQFRGMERNVQHLQESTVKVMTPYLINGVREAVEGIDVDLKEIGTEALKATHFDKLIV NYGFTSSNKIIKGWEIDLTQEHRMFAVDSLMHTNMKNIYAIGDGVEYPGKLRLIATAFGEGPIAVNQIMNDLYPGKRGPV HSTSMFEK
Sequences:
>Translated_328_residues MTEMYDITIIGGGPAGLFAGFYAGMRTAKTQIIESLPQAGGQVAALYPEKMIYDVGGYAGIKAANLAKELEKQTRLVGTE IRLNETVVDIQAQADFYHVKTNRNEYDTRAILLATGNGAFNPRKLAVEGLDHLEDKKIYYHMPDVEHFENQDILVAGGGD SAIDIALMLEPIAKSISLVHRRQQFRGMERNVQHLQESTVKVMTPYLINGVREAVEGIDVDLKEIGTEALKATHFDKLIV NYGFTSSNKIIKGWEIDLTQEHRMFAVDSLMHTNMKNIYAIGDGVEYPGKLRLIATAFGEGPIAVNQIMNDLYPGKRGPV HSTSMFEK >Mature_327_residues TEMYDITIIGGGPAGLFAGFYAGMRTAKTQIIESLPQAGGQVAALYPEKMIYDVGGYAGIKAANLAKELEKQTRLVGTEI RLNETVVDIQAQADFYHVKTNRNEYDTRAILLATGNGAFNPRKLAVEGLDHLEDKKIYYHMPDVEHFENQDILVAGGGDS AIDIALMLEPIAKSISLVHRRQQFRGMERNVQHLQESTVKVMTPYLINGVREAVEGIDVDLKEIGTEALKATHFDKLIVN YGFTSSNKIIKGWEIDLTQEHRMFAVDSLMHTNMKNIYAIGDGVEYPGKLRLIATAFGEGPIAVNQIMNDLYPGKRGPVH STSMFEK
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferredoxin--NADP reductase type 2 family
Homologues:
None
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): FENR_PEDPA (Q03H60)
Other databases:
- EMBL: CP000422 - RefSeq: YP_803904.1 - ProteinModelPortal: Q03H60 - SMR: Q03H60 - STRING: Q03H60 - GeneID: 4418437 - GenomeReviews: CP000422_GR - KEGG: ppe:PEPE_0366 - NMPDR: fig|278197.10.peg.339 - eggNOG: COG0492 - HOGENOM: HBG669726 - OMA: FQVFELG - BioCyc: PPEN278197:PEPE_0366-MONOMER - HAMAP: MF_01685 - InterPro: IPR013027 - InterPro: IPR022890 - InterPro: IPR001327 - InterPro: IPR000103 - PRINTS: PR00368 - PRINTS: PR00469
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2
EC number: =1.18.1.2
Molecular weight: Translated: 36365; Mature: 36234
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: BINDING 34-34 BINDING 42-42 BINDING 47-47 BINDING 87-87 BINDING 120-120 BINDING 283-283 BINDING 323-323
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEMYDITIIGGGPAGLFAGFYAGMRTAKTQIIESLPQAGGQVAALYPEKMIYDVGGYAG CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHEEECCCCCC IKAANLAKELEKQTRLVGTEIRLNETVVDIQAQADFYHVKTNRNEYDTRAILLATGNGAF CHHHHHHHHHHHHHHHHCCEEEECCEEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCC NPRKLAVEGLDHLEDKKIYYHMPDVEHFENQDILVAGGGDSAIDIALMLEPIAKSISLVH CCHHHHHHHHHCCCCCEEEEECCCHHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHH RRQQFRGMERNVQHLQESTVKVMTPYLINGVREAVEGIDVDLKEIGTEALKATHFDKLIV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHEEE NYGFTSSNKIIKGWEIDLTQEHRMFAVDSLMHTNMKNIYAIGDGVEYPGKLRLIATAFGE ECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCC GPIAVNQIMNDLYPGKRGPVHSTSMFEK CCCHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TEMYDITIIGGGPAGLFAGFYAGMRTAKTQIIESLPQAGGQVAALYPEKMIYDVGGYAG CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHEEECCCCCC IKAANLAKELEKQTRLVGTEIRLNETVVDIQAQADFYHVKTNRNEYDTRAILLATGNGAF CHHHHHHHHHHHHHHHHCCEEEECCEEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCC NPRKLAVEGLDHLEDKKIYYHMPDVEHFENQDILVAGGGDSAIDIALMLEPIAKSISLVH CCHHHHHHHHHCCCCCEEEEECCCHHHCCCCCEEEECCCCCEEEHHHHHHHHHHHHHHHH RRQQFRGMERNVQHLQESTVKVMTPYLINGVREAVEGIDVDLKEIGTEALKATHFDKLIV HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCHHHHHHHHHHHEEE NYGFTSSNKIIKGWEIDLTQEHRMFAVDSLMHTNMKNIYAIGDGVEYPGKLRLIATAFGE ECCCCCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEEEECCC GPIAVNQIMNDLYPGKRGPVHSTSMFEK CCCHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA