| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492153
Identifier: 116492153
GI number: 116492153
Start: 396830
End: 397360
Strand: Direct
Name: 116492153
Synonym: PEPE_0350
Alternate gene names: NA
Gene position: 396830-397360 (Clockwise)
Preceding gene: 116492150
Following gene: 116492155
Centisome position: 21.66
GC content: 33.9
Gene sequence:
>531_bases ATGAGTGATTATAAAGAATACCAAAGATGGCTTGAATTAGTACGATTAATTGAATTACCCCATTGGGATGATTTGCCTAA TTTTGATCTTTATATGGATCAAGTAGTGGCATTAATGACCGAATACACAGGTCCTTTGGGACTTGAAGCAGTGACTCCGG CGATGGTTAATAATTATGTTAAAAATAAGGTAATTGTCGCTCCCACTAAGAAGAAATATCAAGTTATGCAAATTGCTGAT ATCTTGTTAATTACACTTTTAAAACAATCTTTTTCCATTCAAGAAATCCGTTCAGGAATTGATCGGGTGACTGCTAGTGA GTATCCCAAACAAGCTTACGATCGCTTCATTGATTTAGTTAATAATAAAATCAAGCATATGGGACTATCACGTCCAGACC GTAATGCCAACAATCTAACAGATCAACTTTTAGAAGCAGCTTCCAACATGATTGTTGATCAATTAGAAACTAATCAATTA GTTAAAGTGGTTAAAGATTCGAAAAAACATCAACCGACTAAGATTAAATAA
Upstream 100 bases:
>100_bases GCTAATTTTTGATAAACAATTCTATGCATCGAGGTTAACTAGTTTTTAAAACTAGATGAAGATGTTATAATAATGGTAAA TAAGTAAAGGAGCACTAGTT
Downstream 100 bases:
>100_bases AAAAAGAGGATCTACGATTTATTTGTCGTAGGTTCTCTTTTTTACTATTCAATAATGTCACCGAAAGTCCCGTGAACTAG TTGAGCTAAATCCTCCGCCT
Product: BS_ykrK family protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYVKNKVIVAPTKKKYQVMQIAD ILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLVNNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQL VKVVKDSKKHQPTKIK
Sequences:
>Translated_176_residues MSDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYVKNKVIVAPTKKKYQVMQIAD ILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLVNNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQL VKVVKDSKKHQPTKIK >Mature_175_residues SDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYVKNKVIVAPTKKKYQVMQIADI LLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLVNNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQLV KVVKDSKKHQPTKIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20365; Mature: 20234
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYV CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KNKVIVAPTKKKYQVMQIADILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLV HCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH NNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQLVKVVKDSKKHQPTKIK HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYV CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH KNKVIVAPTKKKYQVMQIADILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLV HCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH NNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQLVKVVKDSKKHQPTKIK HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA