Definition Pediococcus pentosaceus ATCC 25745, complete genome.
Accession NC_008525
Length 1,832,387

Click here to switch to the map view.

The map label for this gene is 116492153

Identifier: 116492153

GI number: 116492153

Start: 396830

End: 397360

Strand: Direct

Name: 116492153

Synonym: PEPE_0350

Alternate gene names: NA

Gene position: 396830-397360 (Clockwise)

Preceding gene: 116492150

Following gene: 116492155

Centisome position: 21.66

GC content: 33.9

Gene sequence:

>531_bases
ATGAGTGATTATAAAGAATACCAAAGATGGCTTGAATTAGTACGATTAATTGAATTACCCCATTGGGATGATTTGCCTAA
TTTTGATCTTTATATGGATCAAGTAGTGGCATTAATGACCGAATACACAGGTCCTTTGGGACTTGAAGCAGTGACTCCGG
CGATGGTTAATAATTATGTTAAAAATAAGGTAATTGTCGCTCCCACTAAGAAGAAATATCAAGTTATGCAAATTGCTGAT
ATCTTGTTAATTACACTTTTAAAACAATCTTTTTCCATTCAAGAAATCCGTTCAGGAATTGATCGGGTGACTGCTAGTGA
GTATCCCAAACAAGCTTACGATCGCTTCATTGATTTAGTTAATAATAAAATCAAGCATATGGGACTATCACGTCCAGACC
GTAATGCCAACAATCTAACAGATCAACTTTTAGAAGCAGCTTCCAACATGATTGTTGATCAATTAGAAACTAATCAATTA
GTTAAAGTGGTTAAAGATTCGAAAAAACATCAACCGACTAAGATTAAATAA

Upstream 100 bases:

>100_bases
GCTAATTTTTGATAAACAATTCTATGCATCGAGGTTAACTAGTTTTTAAAACTAGATGAAGATGTTATAATAATGGTAAA
TAAGTAAAGGAGCACTAGTT

Downstream 100 bases:

>100_bases
AAAAAGAGGATCTACGATTTATTTGTCGTAGGTTCTCTTTTTTACTATTCAATAATGTCACCGAAAGTCCCGTGAACTAG
TTGAGCTAAATCCTCCGCCT

Product: BS_ykrK family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYVKNKVIVAPTKKKYQVMQIAD
ILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLVNNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQL
VKVVKDSKKHQPTKIK

Sequences:

>Translated_176_residues
MSDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYVKNKVIVAPTKKKYQVMQIAD
ILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLVNNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQL
VKVVKDSKKHQPTKIK
>Mature_175_residues
SDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYVKNKVIVAPTKKKYQVMQIADI
LLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLVNNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQLV
KVVKDSKKHQPTKIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20365; Mature: 20234

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYV
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
KNKVIVAPTKKKYQVMQIADILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLV
HCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQLVKVVKDSKKHQPTKIK
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SDYKEYQRWLELVRLIELPHWDDLPNFDLYMDQVVALMTEYTGPLGLEAVTPAMVNNYV
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
KNKVIVAPTKKKYQVMQIADILLITLLKQSFSIQEIRSGIDRVTASEYPKQAYDRFIDLV
HCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
NNKIKHMGLSRPDRNANNLTDQLLEAASNMIVDQLETNQLVKVVKDSKKHQPTKIK
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA