| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492122
Identifier: 116492122
GI number: 116492122
Start: 366029
End: 367156
Strand: Direct
Name: 116492122
Synonym: PEPE_0319
Alternate gene names: NA
Gene position: 366029-367156 (Clockwise)
Preceding gene: 116492121
Following gene: 116492123
Centisome position: 19.98
GC content: 34.22
Gene sequence:
>1128_bases TTGAGAAGAAAAATCATTTCTTTAGGAATGTTGATTGGATGCATCTTAATCTTAGTTGGTTGTGGACAAAAACAACCACA AACTAAGATTCCTAAAGCAGACGCCGATTATTTAACCATTACAACGCAGTATCATAAAAACAAACAAAACATCGAATTGT TACATAATTTTTTAAAAGATTCAATGGTTCAAAAAGCTGGTATCTACACGAATTTTAATAATAATCAAAAAAAATCCGAT AATGCCACGGGACATGATATGTTATCTGAATCATCAGGTTTATGGTTAGAATACTTGGCGCAAACTCATCAAAATAAGGC TTTTCGGGAGTTCTACAAAAATACCAAGAAATATTTTGATCAAGGTCGGCAATTTAGTTATCGCATCGATGGTAAGACTA AGAAAAAGTCCGATGTGAATGCTACGCTGGATGATTTAAGAATTATTCGTGCTTTACAAATTTATGCGCAAAATAATAAT AGTAAAAAATATCGACACGAAGCGGCTGAACGGTTTGCTATGCTACAAACGACAAGCATTCAAAAAGCACGGGTACTTAA TTTTTATGATGTACGTACTAAAAAAGCTAGTAACGAAAGTTCTTTAGCCTACTATGATTTGGCTACCCTAAAGTACTTTG AATCTGTATCTAAAAAAGAGCGGGGATATTATCGAGAACAATTAAAGCTAGTTGAAAAAGGATATCTGGGAGATATTTTT CCTTTGTACGCTCCGAGCTACAACTGGAAAACAAACCAATATGGCACGAAAAATCTGAATACTTCAGAAGCTTTGATTAC AGTCCTGCATTTGGCTGAAATTGGTAAGATGAAACCTGAAACAGTCAGCTGGTTAAAAATGCAAATTGATAATAAGAAGT TATATAACAGTTACACTACTGCTGGAGCAATCGAGGACCATGACCAATCAACAGGTAATTATGCTATAGCAGCAATGATT TTCGCCAGAAATGGTGATCGTAAATATTATCAAAAGGCCATGAACTTGGTTTGGGATGATCAGGTTCGAAATAAGAATTC AAAAATTTATGGGGCATTAGGTGATACAAAAGATAATGACGCTTACTCATTTAATAACCTATTGGCATTGTTAACATCGC AATACTAA
Upstream 100 bases:
>100_bases GTCTTGCCTTTTTTAGACAATCAATATAAATATGCTTTTTTTATAATTATTATTAGTACAATAATTTTTGAAGAGTAAAA CTTTTGTAAAGGAGAAAACT
Downstream 100 bases:
>100_bases AGGATGGGATGAAATGGTTTCGATTAAAAACAGTTGGAGGGTATTTCAAAAACATATATCACCTGCTGCCGTTGCAACGG CTTTGGCAGCGATTATTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MRRKIISLGMLIGCILILVGCGQKQPQTKIPKADADYLTITTQYHKNKQNIELLHNFLKDSMVQKAGIYTNFNNNQKKSD NATGHDMLSESSGLWLEYLAQTHQNKAFREFYKNTKKYFDQGRQFSYRIDGKTKKKSDVNATLDDLRIIRALQIYAQNNN SKKYRHEAAERFAMLQTTSIQKARVLNFYDVRTKKASNESSLAYYDLATLKYFESVSKKERGYYREQLKLVEKGYLGDIF PLYAPSYNWKTNQYGTKNLNTSEALITVLHLAEIGKMKPETVSWLKMQIDNKKLYNSYTTAGAIEDHDQSTGNYAIAAMI FARNGDRKYYQKAMNLVWDDQVRNKNSKIYGALGDTKDNDAYSFNNLLALLTSQY
Sequences:
>Translated_375_residues MRRKIISLGMLIGCILILVGCGQKQPQTKIPKADADYLTITTQYHKNKQNIELLHNFLKDSMVQKAGIYTNFNNNQKKSD NATGHDMLSESSGLWLEYLAQTHQNKAFREFYKNTKKYFDQGRQFSYRIDGKTKKKSDVNATLDDLRIIRALQIYAQNNN SKKYRHEAAERFAMLQTTSIQKARVLNFYDVRTKKASNESSLAYYDLATLKYFESVSKKERGYYREQLKLVEKGYLGDIF PLYAPSYNWKTNQYGTKNLNTSEALITVLHLAEIGKMKPETVSWLKMQIDNKKLYNSYTTAGAIEDHDQSTGNYAIAAMI FARNGDRKYYQKAMNLVWDDQVRNKNSKIYGALGDTKDNDAYSFNNLLALLTSQY >Mature_375_residues MRRKIISLGMLIGCILILVGCGQKQPQTKIPKADADYLTITTQYHKNKQNIELLHNFLKDSMVQKAGIYTNFNNNQKKSD NATGHDMLSESSGLWLEYLAQTHQNKAFREFYKNTKKYFDQGRQFSYRIDGKTKKKSDVNATLDDLRIIRALQIYAQNNN SKKYRHEAAERFAMLQTTSIQKARVLNFYDVRTKKASNESSLAYYDLATLKYFESVSKKERGYYREQLKLVEKGYLGDIF PLYAPSYNWKTNQYGTKNLNTSEALITVLHLAEIGKMKPETVSWLKMQIDNKKLYNSYTTAGAIEDHDQSTGNYAIAAMI FARNGDRKYYQKAMNLVWDDQVRNKNSKIYGALGDTKDNDAYSFNNLLALLTSQY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43333; Mature: 43333
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRKIISLGMLIGCILILVGCGQKQPQTKIPKADADYLTITTQYHKNKQNIELLHNFLKD CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCHHHHHHHHHHH SMVQKAGIYTNFNNNQKKSDNATGHDMLSESSGLWLEYLAQTHQNKAFREFYKNTKKYFD HHHHHHCCEECCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH QGRQFSYRIDGKTKKKSDVNATLDDLRIIRALQIYAQNNNSKKYRHEAAERFAMLQTTSI CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC QKARVLNFYDVRTKKASNESSLAYYDLATLKYFESVSKKERGYYREQLKLVEKGYLGDIF CHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PLYAPSYNWKTNQYGTKNLNTSEALITVLHLAEIGKMKPETVSWLKMQIDNKKLYNSYTT HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCHHHHHCCCC AGAIEDHDQSTGNYAIAAMIFARNGDRKYYQKAMNLVWDDQVRNKNSKIYGALGDTKDND CCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCCCC AYSFNNLLALLTSQY CHHHHHHHHHHHCCC >Mature Secondary Structure MRRKIISLGMLIGCILILVGCGQKQPQTKIPKADADYLTITTQYHKNKQNIELLHNFLKD CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHCCCCCHHHHHHHHHHH SMVQKAGIYTNFNNNQKKSDNATGHDMLSESSGLWLEYLAQTHQNKAFREFYKNTKKYFD HHHHHHCCEECCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHH QGRQFSYRIDGKTKKKSDVNATLDDLRIIRALQIYAQNNNSKKYRHEAAERFAMLQTTSI CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC QKARVLNFYDVRTKKASNESSLAYYDLATLKYFESVSKKERGYYREQLKLVEKGYLGDIF CHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PLYAPSYNWKTNQYGTKNLNTSEALITVLHLAEIGKMKPETVSWLKMQIDNKKLYNSYTT HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHEEECCHHHHHCCCC AGAIEDHDQSTGNYAIAAMIFARNGDRKYYQKAMNLVWDDQVRNKNSKIYGALGDTKDND CCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCCCC AYSFNNLLALLTSQY CHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA