| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is pepO [H]
Identifier: 116492106
GI number: 116492106
Start: 346504
End: 348417
Strand: Direct
Name: pepO [H]
Synonym: PEPE_0302
Alternate gene names: 116492106
Gene position: 346504-348417 (Clockwise)
Preceding gene: 116492105
Following gene: 116492107
Centisome position: 18.91
GC content: 38.19
Gene sequence:
>1914_bases ATGCCAAGTTCAATTAAAGACGATTTTTATGATGCAGTGAATGGTGAATGGCTAGCAACTGCAGAAATCCCCTCAGATCA TTCATCAACGGGTGGGTTTATGGACCTAGTTGATGGCGTGGATGAAAATTTGATGAAGGATTTTGCAGAAATGCGTTCAG GTGCCAAAGAACCTAATACGCCAGAATTAAAAGAATTTATCAAGTTTTATGAAATTGCAGCTGATTTCAAAAAACGGGAC GAAGATGGAGTAAAACCACTTCTTCCGTACTTAAAACAAATTGAAGATTTAAAGAGTTGGGATGATGTAAATGCCAACTT AAAAGAATTATTTTTTAATGGCGTAGAATTACCAGTAGATTTAGGTATTGAACCTGATTTAAAGGGTAATGGAGCAGATA AACGCAATGTTTTATGGGCTGGTGGTGTAAGTTTAATCCTCCCAGATAAAACCTACTATGACCAAGATAATCCGTCTGGA CCACAGTTGATGCAAGTCTTTACCCAAATGATGATGCAATTACTAACGAAGTTGGGTAAGTCTGAAGATGAAGCCCAAGC TATAATTGATGGAGCTAAACGTTTCGATGCTAGTATTGCTCCTTTCCGTAAAAACTCTGAAGAACTTAGCGATGTAGCTA AGCTTTATAATCCATGGGAGCTTGATCATTTCGCTGACATGGTTCAAGAGATTGATGTTAAAAAATTAGTCCAAGCATTG ATTGGAACTGTTCCAGAAAAATTAATTATCACTGAACCTAAATTCTACGAAAACTTGCACCAAATTGTTAACGCCGATAC ATTTGAAGATTATAAAAAATGGGCCTACGTTAACATGGTCCGCTCGTTGTCAGGCTATTTGAGTGAAGAATTCCGCCAAA TTGGTGGCACTTTTGGGCGAGCATTATCAGGGCAACAAGAATCAATGCCACAAGAAAAGAGTGCATTTTACTTAGCACGT CGCACGTTTAGCCAAGTCGTTGGTGAATACTATGGACATAAATATTTCGGGGAAACTGCTAAAAAAGATGTTCATGATAT GGTGGTTTCGATGATTGATGTTTATGAAAAACGACTGGCAGAAAATACTTGGTTAGGGGATGCAACCCGTTCTAAAGCGA TTACGAAGTTACGTTCGTTGAAGATTTTAGTAGGTTACCCAGATGAATTAAAAGCAGTTTATAAGAAGTTGAAAACTAAA ACAGCCGCTGAGGGTGGAAGTTTAGTGGAAAACGTTCAAGAATTTTCACGAATTTTCTTAGAAGATCAACTTGCTAAGTA TGGTAAGGAAGTCGACCGTAGTGAATGGCATATGAGTGCTGATACAGTAAATGCTTATTATTCACCAGAAGGCAACTTAA TCTGTTTCCCAGCTGCTATTTTACAAGCACCATTTTACAGTTTAGAACAAACCGCTAGTCAAAATTATGGTGGAATTGGC GCAGTAATGGCGCACGAAATTTCACATGCTTTTGATCCTAACGGAGCTTTATTTGATGAATTTGGTAACATGGACAATTG GTGGACAGAAGATGATTTGAAACATTTCCACCAACTTTCAGAAGCAATGGTAAAAGAATTTGATGGAATTCCATTTGCGG GTGGAAAAGTAAACGGTAAGTTGGTTGTTACCGAAAATGTTGCAGATGATGGTGGACTTAAAGCAGCGTTGGAAGCAGCT AAGGCTACTAAAGATGCTAATCTAGAAGAATTTTTTACTAACTGGGCCACAATTTGGCGCACTAAGGCTACTAAACAACG AGAAGAGTTGCTATTAGCAATTGATGTCCATGCTCCTGCAAAGTTACGGGCGAACGTCCAAGTAAAAAATTTTGAAGAAT TTTATGAAACCTTTGATGTAAAAGAGGGCGATGGAATGTATCTTGCTCCCGAAAAACGAGTTCAAATTTGGTAA
Upstream 100 bases:
>100_bases GAATTCCAAAGATATTGCTAAGTATATGCATGACGCGGTGTCATAGAAGTAGATAAGAGTATAATACAGAGTTAATAAAT TTTGAAAGTGAGGAATTAGA
Downstream 100 bases:
>100_bases AAAATCAAACTAAAAAGACGATTGCTAATTAGCAGTCGTCTTTTTTAGTTATTTCTAAAGTAAAATACGAACTATAAAAG TTTAAATAATCAATTTATGG
Product: neutral endopeptidase
Products: NA
Alternate protein names: Endopeptidase O [H]
Number of amino acids: Translated: 637; Mature: 636
Protein sequence:
>637_residues MPSSIKDDFYDAVNGEWLATAEIPSDHSSTGGFMDLVDGVDENLMKDFAEMRSGAKEPNTPELKEFIKFYEIAADFKKRD EDGVKPLLPYLKQIEDLKSWDDVNANLKELFFNGVELPVDLGIEPDLKGNGADKRNVLWAGGVSLILPDKTYYDQDNPSG PQLMQVFTQMMMQLLTKLGKSEDEAQAIIDGAKRFDASIAPFRKNSEELSDVAKLYNPWELDHFADMVQEIDVKKLVQAL IGTVPEKLIITEPKFYENLHQIVNADTFEDYKKWAYVNMVRSLSGYLSEEFRQIGGTFGRALSGQQESMPQEKSAFYLAR RTFSQVVGEYYGHKYFGETAKKDVHDMVVSMIDVYEKRLAENTWLGDATRSKAITKLRSLKILVGYPDELKAVYKKLKTK TAAEGGSLVENVQEFSRIFLEDQLAKYGKEVDRSEWHMSADTVNAYYSPEGNLICFPAAILQAPFYSLEQTASQNYGGIG AVMAHEISHAFDPNGALFDEFGNMDNWWTEDDLKHFHQLSEAMVKEFDGIPFAGGKVNGKLVVTENVADDGGLKAALEAA KATKDANLEEFFTNWATIWRTKATKQREELLLAIDVHAPAKLRANVQVKNFEEFYETFDVKEGDGMYLAPEKRVQIW
Sequences:
>Translated_637_residues MPSSIKDDFYDAVNGEWLATAEIPSDHSSTGGFMDLVDGVDENLMKDFAEMRSGAKEPNTPELKEFIKFYEIAADFKKRD EDGVKPLLPYLKQIEDLKSWDDVNANLKELFFNGVELPVDLGIEPDLKGNGADKRNVLWAGGVSLILPDKTYYDQDNPSG PQLMQVFTQMMMQLLTKLGKSEDEAQAIIDGAKRFDASIAPFRKNSEELSDVAKLYNPWELDHFADMVQEIDVKKLVQAL IGTVPEKLIITEPKFYENLHQIVNADTFEDYKKWAYVNMVRSLSGYLSEEFRQIGGTFGRALSGQQESMPQEKSAFYLAR RTFSQVVGEYYGHKYFGETAKKDVHDMVVSMIDVYEKRLAENTWLGDATRSKAITKLRSLKILVGYPDELKAVYKKLKTK TAAEGGSLVENVQEFSRIFLEDQLAKYGKEVDRSEWHMSADTVNAYYSPEGNLICFPAAILQAPFYSLEQTASQNYGGIG AVMAHEISHAFDPNGALFDEFGNMDNWWTEDDLKHFHQLSEAMVKEFDGIPFAGGKVNGKLVVTENVADDGGLKAALEAA KATKDANLEEFFTNWATIWRTKATKQREELLLAIDVHAPAKLRANVQVKNFEEFYETFDVKEGDGMYLAPEKRVQIW >Mature_636_residues PSSIKDDFYDAVNGEWLATAEIPSDHSSTGGFMDLVDGVDENLMKDFAEMRSGAKEPNTPELKEFIKFYEIAADFKKRDE DGVKPLLPYLKQIEDLKSWDDVNANLKELFFNGVELPVDLGIEPDLKGNGADKRNVLWAGGVSLILPDKTYYDQDNPSGP QLMQVFTQMMMQLLTKLGKSEDEAQAIIDGAKRFDASIAPFRKNSEELSDVAKLYNPWELDHFADMVQEIDVKKLVQALI GTVPEKLIITEPKFYENLHQIVNADTFEDYKKWAYVNMVRSLSGYLSEEFRQIGGTFGRALSGQQESMPQEKSAFYLARR TFSQVVGEYYGHKYFGETAKKDVHDMVVSMIDVYEKRLAENTWLGDATRSKAITKLRSLKILVGYPDELKAVYKKLKTKT AAEGGSLVENVQEFSRIFLEDQLAKYGKEVDRSEWHMSADTVNAYYSPEGNLICFPAAILQAPFYSLEQTASQNYGGIGA VMAHEISHAFDPNGALFDEFGNMDNWWTEDDLKHFHQLSEAMVKEFDGIPFAGGKVNGKLVVTENVADDGGLKAALEAAK ATKDANLEEFFTNWATIWRTKATKQREELLLAIDVHAPAKLRANVQVKNFEEFYETFDVKEGDGMYLAPEKRVQIW
Specific function: Endopeptidase with broad substrate specificity for several oligopeptides [H]
COG id: COG3590
COG function: function code O; Predicted metalloendopeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M13 family [H]
Homologues:
Organism=Homo sapiens, GI157426891, Length=665, Percent_Identity=26.3157894736842, Blast_Score=215, Evalue=1e-55, Organism=Homo sapiens, GI164519138, Length=671, Percent_Identity=25.0372578241431, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI164519140, Length=671, Percent_Identity=25.0372578241431, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI4503443, Length=668, Percent_Identity=25.1497005988024, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI164519136, Length=668, Percent_Identity=25.1497005988024, Blast_Score=211, Evalue=2e-54, Organism=Homo sapiens, GI239049391, Length=686, Percent_Identity=26.530612244898, Blast_Score=207, Evalue=3e-53, Organism=Homo sapiens, GI116256333, Length=685, Percent_Identity=26.4233576642336, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI116256331, Length=685, Percent_Identity=26.4233576642336, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI116256329, Length=685, Percent_Identity=26.4233576642336, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI116256327, Length=685, Percent_Identity=26.4233576642336, Blast_Score=205, Evalue=9e-53, Organism=Homo sapiens, GI82617560, Length=670, Percent_Identity=24.6268656716418, Blast_Score=198, Evalue=1e-50, Organism=Homo sapiens, GI153945761, Length=670, Percent_Identity=24.6268656716418, Blast_Score=198, Evalue=1e-50, Organism=Homo sapiens, GI153945836, Length=670, Percent_Identity=24.6268656716418, Blast_Score=198, Evalue=1e-50, Organism=Homo sapiens, GI153945771, Length=670, Percent_Identity=24.6268656716418, Blast_Score=197, Evalue=2e-50, Organism=Homo sapiens, GI90403592, Length=679, Percent_Identity=25.6259204712813, Blast_Score=190, Evalue=4e-48, Organism=Homo sapiens, GI4557691, Length=518, Percent_Identity=22.3938223938224, Blast_Score=115, Evalue=9e-26, Organism=Caenorhabditis elegans, GI86562497, Length=682, Percent_Identity=26.099706744868, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI17533333, Length=674, Percent_Identity=25.0741839762611, Blast_Score=200, Evalue=2e-51, Organism=Caenorhabditis elegans, GI32563993, Length=593, Percent_Identity=26.3069139966273, Blast_Score=190, Evalue=2e-48, Organism=Caenorhabditis elegans, GI17564342, Length=511, Percent_Identity=25.0489236790607, Blast_Score=174, Evalue=2e-43, Organism=Caenorhabditis elegans, GI71987442, Length=667, Percent_Identity=24.1379310344828, Blast_Score=171, Evalue=1e-42, Organism=Caenorhabditis elegans, GI25148650, Length=686, Percent_Identity=24.3440233236152, Blast_Score=169, Evalue=4e-42, Organism=Caenorhabditis elegans, GI17534401, Length=326, Percent_Identity=25.7668711656442, Blast_Score=131, Evalue=1e-30, Organism=Caenorhabditis elegans, GI71994787, Length=330, Percent_Identity=26.3636363636364, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17570047, Length=348, Percent_Identity=25, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17533319, Length=568, Percent_Identity=22.5352112676056, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71998977, Length=316, Percent_Identity=26.2658227848101, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71998975, Length=316, Percent_Identity=26.2658227848101, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71988640, Length=222, Percent_Identity=29.7297297297297, Blast_Score=96, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17532485, Length=319, Percent_Identity=26.0188087774295, Blast_Score=93, Evalue=4e-19, Organism=Caenorhabditis elegans, GI133931212, Length=470, Percent_Identity=22.3404255319149, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193204436, Length=318, Percent_Identity=21.0691823899371, Blast_Score=70, Evalue=4e-12, Organism=Drosophila melanogaster, GI24643425, Length=684, Percent_Identity=26.6081871345029, Blast_Score=240, Evalue=2e-63, Organism=Drosophila melanogaster, GI45551938, Length=547, Percent_Identity=27.0566727605119, Blast_Score=208, Evalue=9e-54, Organism=Drosophila melanogaster, GI45550777, Length=547, Percent_Identity=27.0566727605119, Blast_Score=208, Evalue=1e-53, Organism=Drosophila melanogaster, GI24640050, Length=685, Percent_Identity=25.2554744525547, Blast_Score=182, Evalue=6e-46, Organism=Drosophila melanogaster, GI24640052, Length=685, Percent_Identity=25.2554744525547, Blast_Score=182, Evalue=6e-46, Organism=Drosophila melanogaster, GI17737761, Length=679, Percent_Identity=25.3313696612666, Blast_Score=181, Evalue=9e-46, Organism=Drosophila melanogaster, GI24650487, Length=405, Percent_Identity=24.9382716049383, Blast_Score=142, Evalue=5e-34, Organism=Drosophila melanogaster, GI221474862, Length=381, Percent_Identity=27.0341207349081, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI281362760, Length=672, Percent_Identity=21.7261904761905, Blast_Score=108, Evalue=1e-23, Organism=Drosophila melanogaster, GI24650889, Length=650, Percent_Identity=22, Blast_Score=103, Evalue=4e-22, Organism=Drosophila melanogaster, GI24650765, Length=364, Percent_Identity=23.9010989010989, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI24650885, Length=347, Percent_Identity=23.9193083573487, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355943, Length=338, Percent_Identity=23.3727810650888, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24641622, Length=357, Percent_Identity=25.7703081232493, Blast_Score=84, Evalue=4e-16, Organism=Drosophila melanogaster, GI24650883, Length=281, Percent_Identity=22.7758007117438, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000718 - InterPro: IPR018497 - InterPro: IPR008753 [H]
Pfam domain/function: PF01431 Peptidase_M13; PF05649 Peptidase_M13_N [H]
EC number: NA
Molecular weight: Translated: 71969; Mature: 71838
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSIKDDFYDAVNGEWLATAEIPSDHSSTGGFMDLVDGVDENLMKDFAEMRSGAKEPNT CCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCC PELKEFIKFYEIAADFKKRDEDGVKPLLPYLKQIEDLKSWDDVNANLKELFFNGVELPVD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEE LGIEPDLKGNGADKRNVLWAGGVSLILPDKTYYDQDNPSGPQLMQVFTQMMMQLLTKLGK CCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC SEDEAQAIIDGAKRFDASIAPFRKNSEELSDVAKLYNPWELDHFADMVQEIDVKKLVQAL CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHH IGTVPEKLIITEPKFYENLHQIVNADTFEDYKKWAYVNMVRSLSGYLSEEFRQIGGTFGR HHCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSGQQESMPQEKSAFYLARRTFSQVVGEYYGHKYFGETAKKDVHDMVVSMIDVYEKRLA HCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ENTWLGDATRSKAITKLRSLKILVGYPDELKAVYKKLKTKTAAEGGSLVENVQEFSRIFL HCCCCCCHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH EDQLAKYGKEVDRSEWHMSADTVNAYYSPEGNLICFPAAILQAPFYSLEQTASQNYGGIG HHHHHHHHHHHCHHHHHCCCCCEEEEECCCCCEEEECHHHHHCCHHHHHHHHCCCCCCHH AVMAHEISHAFDPNGALFDEFGNMDNWWTEDDLKHFHQLSEAMVKEFDGIPFAGGKVNGK HHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE LVVTENVADDGGLKAALEAAKATKDANLEEFFTNWATIWRTKATKQREELLLAIDVHAPA EEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC KLRANVQVKNFEEFYETFDVKEGDGMYLAPEKRVQIW HHCCCCEEHHHHHHHHHHCCCCCCCCEECCCCCCCCC >Mature Secondary Structure PSSIKDDFYDAVNGEWLATAEIPSDHSSTGGFMDLVDGVDENLMKDFAEMRSGAKEPNT CCCCCHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCC PELKEFIKFYEIAADFKKRDEDGVKPLLPYLKQIEDLKSWDDVNANLKELFFNGVELPVD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEE LGIEPDLKGNGADKRNVLWAGGVSLILPDKTYYDQDNPSGPQLMQVFTQMMMQLLTKLGK CCCCCCCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC SEDEAQAIIDGAKRFDASIAPFRKNSEELSDVAKLYNPWELDHFADMVQEIDVKKLVQAL CHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHH IGTVPEKLIITEPKFYENLHQIVNADTFEDYKKWAYVNMVRSLSGYLSEEFRQIGGTFGR HHCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALSGQQESMPQEKSAFYLARRTFSQVVGEYYGHKYFGETAKKDVHDMVVSMIDVYEKRLA HCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ENTWLGDATRSKAITKLRSLKILVGYPDELKAVYKKLKTKTAAEGGSLVENVQEFSRIFL HCCCCCCHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH EDQLAKYGKEVDRSEWHMSADTVNAYYSPEGNLICFPAAILQAPFYSLEQTASQNYGGIG HHHHHHHHHHHCHHHHHCCCCCEEEEECCCCCEEEECHHHHHCCHHHHHHHHCCCCCCHH AVMAHEISHAFDPNGALFDEFGNMDNWWTEDDLKHFHQLSEAMVKEFDGIPFAGGKVNGK HHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE LVVTENVADDGGLKAALEAAKATKDANLEEFFTNWATIWRTKATKQREELLLAIDVHAPA EEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCC KLRANVQVKNFEEFYETFDVKEGDGMYLAPEKRVQIW HHCCCCEEHHHHHHHHHHCCCCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8244921; 11337471 [H]