| Definition | Pediococcus pentosaceus ATCC 25745, complete genome. |
|---|---|
| Accession | NC_008525 |
| Length | 1,832,387 |
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The map label for this gene is 116492058
Identifier: 116492058
GI number: 116492058
Start: 301301
End: 302239
Strand: Direct
Name: 116492058
Synonym: PEPE_0254
Alternate gene names: NA
Gene position: 301301-302239 (Clockwise)
Preceding gene: 116492057
Following gene: 116492060
Centisome position: 16.44
GC content: 38.98
Gene sequence:
>939_bases ATGGGACTATTGATGTTAGGATTGGTTGCGGGTGCGGTAGTACCCTTTCAAACGGCGGTTAATTCACGATTAAGAACGTA TGTTATTTCACCATTCGTATCGTCTTTGATTTCTTTTATGGTGGGAACCATCTTTTTGATAGTAATCATTGTTTTAAGCG GTGGACAGCTCTTATTAACTAATGCGCAATTACATGCCATTCCATGGTGGATGTATCTCGGTGGTGTTTTGGGGATGATT GGATTAACAACTAATATTCTTTTATTCCCCATTTTAGGTAGTGTTCAAACGGTGATCATGCCCGTTTTAGGTCAAATTAT GATGAGTATGATAATTGATAACTATGGCATGTTTGGCACCACACGCCATCCACTTTCGTTAATGCGAATGGTCGGAGTTC TACTATTGATTGTGGGGGTATTAATTGTGGTCGCCTTACCAGAATATTTAGCACGGAATTCTATGAAAAGACCCCCTGAA CAACGAGTTAAGTGGAAATGGTTATGGCAAATTTTCGGCGTGCTTGTGGGCGGAATGCTCGCAATTCAAGCAGCATTAAA TGGACGATTAGGTGGGTTATTACAGGCCCCTATTCACGCTGCTTTAATATCATTTTTTATTGGAACAATAATGTTATTCC TGGTAGCTGTATTCCAAGGAACTTTAAAAAATATCCGGCTAGTTGTTCAACAGAAAACACCTTGGTGGGTTTGGATTGGC GGTTTTTTTGGAGCAGCTTATATCTTTTTAAATGCATATTTGGTACCACAGATTGGAACTGGAACGGTAGTAGTGCTAGT TTTACTGGGACAAATTATCAGTAGTTTAAATATTGATCAGTTTGGCTTATTAGGATCGATGAAATCGAGCATCTCAGTTG CTAAGATTGCGGGCTTAATCATTATGATTGCTGGAGTAGGATTAATTGAAGTAATGTAA
Upstream 100 bases:
>100_bases ATTGTTGCTTGTGTCATGATTTTTTTAGTTTAAAATAAAGTTATAGTAACGATGGAAACGCTTTAACCGAAACTAGGATA GCGTTGAAAGGAAGCACATA
Downstream 100 bases:
>100_bases ACAAAAAACTCGACGGTTATTCGTCGAGTTTTTGTGATTTATGAGGAGTGATGTTAAATGATTTTTGAAAACTAAATTGA TCAGGCTTAATTTGGGTAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MGLLMLGLVAGAVVPFQTAVNSRLRTYVISPFVSSLISFMVGTIFLIVIIVLSGGQLLLTNAQLHAIPWWMYLGGVLGMI GLTTNILLFPILGSVQTVIMPVLGQIMMSMIIDNYGMFGTTRHPLSLMRMVGVLLLIVGVLIVVALPEYLARNSMKRPPE QRVKWKWLWQIFGVLVGGMLAIQAALNGRLGGLLQAPIHAALISFFIGTIMLFLVAVFQGTLKNIRLVVQQKTPWWVWIG GFFGAAYIFLNAYLVPQIGTGTVVVLVLLGQIISSLNIDQFGLLGSMKSSISVAKIAGLIIMIAGVGLIEVM
Sequences:
>Translated_312_residues MGLLMLGLVAGAVVPFQTAVNSRLRTYVISPFVSSLISFMVGTIFLIVIIVLSGGQLLLTNAQLHAIPWWMYLGGVLGMI GLTTNILLFPILGSVQTVIMPVLGQIMMSMIIDNYGMFGTTRHPLSLMRMVGVLLLIVGVLIVVALPEYLARNSMKRPPE QRVKWKWLWQIFGVLVGGMLAIQAALNGRLGGLLQAPIHAALISFFIGTIMLFLVAVFQGTLKNIRLVVQQKTPWWVWIG GFFGAAYIFLNAYLVPQIGTGTVVVLVLLGQIISSLNIDQFGLLGSMKSSISVAKIAGLIIMIAGVGLIEVM >Mature_311_residues GLLMLGLVAGAVVPFQTAVNSRLRTYVISPFVSSLISFMVGTIFLIVIIVLSGGQLLLTNAQLHAIPWWMYLGGVLGMIG LTTNILLFPILGSVQTVIMPVLGQIMMSMIIDNYGMFGTTRHPLSLMRMVGVLLLIVGVLIVVALPEYLARNSMKRPPEQ RVKWKWLWQIFGVLVGGMLAIQAALNGRLGGLLQAPIHAALISFFIGTIMLFLVAVFQGTLKNIRLVVQQKTPWWVWIGG FFGAAYIFLNAYLVPQIGTGTVVVLVLLGQIISSLNIDQFGLLGSMKSSISVAKIAGLIIMIAGVGLIEVM
Specific function: Unknown
COG id: COG3238
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33792; Mature: 33661
Theoretical pI: Translated: 11.02; Mature: 11.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.8 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLMLGLVAGAVVPFQTAVNSRLRTYVISPFVSSLISFMVGTIFLIVIIVLSGGQLLLT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE NAQLHAIPWWMYLGGVLGMIGLTTNILLFPILGSVQTVIMPVLGQIMMSMIIDNYGMFGT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TRHPLSLMRMVGVLLLIVGVLIVVALPEYLARNSMKRPPEQRVKWKWLWQIFGVLVGGML CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH AIQAALNGRLGGLLQAPIHAALISFFIGTIMLFLVAVFQGTLKNIRLVVQQKTPWWVWIG HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEHH GFFGAAYIFLNAYLVPQIGTGTVVVLVLLGQIISSLNIDQFGLLGSMKSSISVAKIAGLI HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IMIAGVGLIEVM HHHHHHHHHHCC >Mature Secondary Structure GLLMLGLVAGAVVPFQTAVNSRLRTYVISPFVSSLISFMVGTIFLIVIIVLSGGQLLLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE NAQLHAIPWWMYLGGVLGMIGLTTNILLFPILGSVQTVIMPVLGQIMMSMIIDNYGMFGT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC TRHPLSLMRMVGVLLLIVGVLIVVALPEYLARNSMKRPPEQRVKWKWLWQIFGVLVGGML CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH AIQAALNGRLGGLLQAPIHAALISFFIGTIMLFLVAVFQGTLKNIRLVVQQKTPWWVWIG HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEHH GFFGAAYIFLNAYLVPQIGTGTVVVLVLLGQIISSLNIDQFGLLGSMKSSISVAKIAGLI HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH IMIAGVGLIEVM HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA