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The map label for this gene is pbsA1 [H]

Identifier: 116332593

GI number: 116332593

Start: 189565

End: 190242

Strand: Reverse

Name: pbsA1 [H]

Synonym: LBJ_4165

Alternate gene names: 116332593

Gene position: 190242-189565 (Counterclockwise)

Preceding gene: 116332596

Following gene: 116332592

Centisome position: 63.46

GC content: 39.97

Gene sequence:

>678_bases
ATGAGTTTCGCAACCATCTTACGAGAAGGGACATCCGAAGAGCACAAAGCTGCAGAAGGTTCCACTTTCATTCGTTGTTT
TATGAAAGGAATTTTGGAAAAAGGAACTTATGCAAAACATTTGGAAGCGTTTTATTTTGTTTATGAATCTATGGAAGAAG
AATTGGAACGTCATACCGGAAATGTGGTACTAAAATCGATTCATTTTCCAGAGCTTTATCGAAAAGGAGCACTTTTAGAG
GATCTTCAATTCTTTTATGAAATCTGGAAGCCAACCGATCACCAACCTAGCGCAGCAACTCAAGTTTATGTGAAAAGAAT
CCGCAACATTTCCAAAACTCGGCCGGAACTGTTGGCTGCACATTCCTATGTCCGTTATCTGGGAGATCTTTCCGGCGGAC
AGATCTTGAAAAAAGTTGCGGCCAGAGCTTTGAACCTTCCGGAAGGACAAGGGATTTCTTTTTATGAATTTCCCGCCATC
CAGGATATCAATGGATTTAAACAAAATTATCGTGCCGCATTGGATTCTTTGCCCGTAAACGATTCTGAAAAGCAAGCGAT
TCTATCCGAATCTAAACAGGTATTTCTTTTAAATCAGGGAATTTTTTCTGAATTGGAACAGGACTTGATTTCTGCAATCG
GTAAAGAAGTTTACGATACCGTTCTAGGAAAGGGTTGA

Upstream 100 bases:

>100_bases
TTTGAACTTTCCCAATAAAAATCGATCATTTTGTGTAAAATAAGTTTGATTCTCAGTATCAGCTTAAAAGGATTGTCACA
GTATTGTCAGGAGGTGCAAG

Downstream 100 bases:

>100_bases
TTTGAAAAAGTCCGCCTATTTTCTGCCAGTGGCCGTTTTTTTAGCGATGCTTCCGGTTACGATGATCGTACCTGTATTTA
AGGAAATTGTAAAGGATAGA

Product: Heme oxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MSFATILREGTSEEHKAAEGSTFIRCFMKGILEKGTYAKHLEAFYFVYESMEEELERHTGNVVLKSIHFPELYRKGALLE
DLQFFYEIWKPTDHQPSAATQVYVKRIRNISKTRPELLAAHSYVRYLGDLSGGQILKKVAARALNLPEGQGISFYEFPAI
QDINGFKQNYRAALDSLPVNDSEKQAILSESKQVFLLNQGIFSELEQDLISAIGKEVYDTVLGKG

Sequences:

>Translated_225_residues
MSFATILREGTSEEHKAAEGSTFIRCFMKGILEKGTYAKHLEAFYFVYESMEEELERHTGNVVLKSIHFPELYRKGALLE
DLQFFYEIWKPTDHQPSAATQVYVKRIRNISKTRPELLAAHSYVRYLGDLSGGQILKKVAARALNLPEGQGISFYEFPAI
QDINGFKQNYRAALDSLPVNDSEKQAILSESKQVFLLNQGIFSELEQDLISAIGKEVYDTVLGKG
>Mature_224_residues
SFATILREGTSEEHKAAEGSTFIRCFMKGILEKGTYAKHLEAFYFVYESMEEELERHTGNVVLKSIHFPELYRKGALLED
LQFFYEIWKPTDHQPSAATQVYVKRIRNISKTRPELLAAHSYVRYLGDLSGGQILKKVAARALNLPEGQGISFYEFPAIQ
DINGFKQNYRAALDSLPVNDSEKQAILSESKQVFLLNQGIFSELEQDLISAIGKEVYDTVLGKG

Specific function: Catalyzes the opening of the heme ring with the release of iron. Key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae [H]

COG id: COG5398

COG function: function code P; Heme oxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme oxygenase family [H]

Homologues:

Organism=Homo sapiens, GI187761311, Length=209, Percent_Identity=44.0191387559809, Blast_Score=175, Evalue=3e-44,
Organism=Homo sapiens, GI187761309, Length=209, Percent_Identity=44.0191387559809, Blast_Score=175, Evalue=3e-44,
Organism=Homo sapiens, GI187761307, Length=209, Percent_Identity=44.0191387559809, Blast_Score=175, Evalue=3e-44,
Organism=Homo sapiens, GI8051608, Length=209, Percent_Identity=44.0191387559809, Blast_Score=175, Evalue=3e-44,
Organism=Homo sapiens, GI4504437, Length=207, Percent_Identity=43.4782608695652, Blast_Score=171, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002051
- InterPro:   IPR016053
- InterPro:   IPR016084
- InterPro:   IPR018207 [H]

Pfam domain/function: PF01126 Heme_oxygenase [H]

EC number: =1.14.99.3 [H]

Molecular weight: Translated: 25493; Mature: 25362

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFATILREGTSEEHKAAEGSTFIRCFMKGILEKGTYAKHLEAFYFVYESMEEELERHTG
CCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
NVVLKSIHFPELYRKGALLEDLQFFYEIWKPTDHQPSAATQVYVKRIRNISKTRPELLAA
HHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HSYVRYLGDLSGGQILKKVAARALNLPEGQGISFYEFPAIQDINGFKQNYRAALDSLPVN
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCC
DSEKQAILSESKQVFLLNQGIFSELEQDLISAIGKEVYDTVLGKG
CCHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFATILREGTSEEHKAAEGSTFIRCFMKGILEKGTYAKHLEAFYFVYESMEEELERHTG
CHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
NVVLKSIHFPELYRKGALLEDLQFFYEIWKPTDHQPSAATQVYVKRIRNISKTRPELLAA
HHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HSYVRYLGDLSGGQILKKVAARALNLPEGQGISFYEFPAIQDINGFKQNYRAALDSLPVN
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCC
DSEKQAILSESKQVFLLNQGIFSELEQDLISAIGKEVYDTVLGKG
CCHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]