Click here to switch to the map view.

The map label for this gene is yadE [H]

Identifier: 116328404

GI number: 116328404

Start: 2031013

End: 2031903

Strand: Direct

Name: yadE [H]

Synonym: LBL_1744

Alternate gene names: 116328404

Gene position: 2031013-2031903 (Clockwise)

Preceding gene: 116328403

Following gene: 116328405

Centisome position: 56.19

GC content: 40.97

Gene sequence:

>891_bases
TTGAAACAGTCTTTCGTAATTTTAAGATGGCCGATTTTTTGGATCGGAACGTTTTGGATCACATTCAATGTTTGTAATTC
TCCTTTTCGGGAACCCCAAACCTCCTCAAAAACAAATCCGAACGGAATCCCGATTCTTATCTATCACGAGATCGTAACCG
ATCCCAAAAAAGAATCCGGAGAAACCGTGATTTCTCTGCAAAAGTTCGAAGAACAGATGAAATATCTTTTTTCCAAAGGT
TATAACCCGATTACGATGAAGGACCTTCTTTCTTATATACGGAAAGAAAAAGTTTTACCGGACAAGTCCGTGGTTTTAAA
CTTCGACGACGGTTGGAAAAACGTCTTAAACGCAGTTCCAGTACTCAATCGATACTCCTTTCCGGCTTCTTTTTGGATCA
TAGCCGGCCCGAAGGGTATTGGAAACGGAGAATATCTGGAATGGTCCGACATCCAAGAACTTGCCAAGAATCCTCGATTT
GAAATCGGATCTCATACCTACAGCCACCCCTGGAATCCAAATGATAACTTGGTGACTTGGGTCGACAACCGTGTCGATGG
AAAAAGTGAAAAAGATGCCCTCTTTGAACTAAAAGAATCCAAAAGAATTCTAGAATCCAAGTTAGACATCCTTGTCGACT
ATATAGCTTGGCCCTGCGGCTGGTATAATGATAAACTCGTACAGTTAGCGGTGCAGTCAGGTTATAAAGCGATACTTACG
ACGGAGGATGGAACCAATCTACCGGGGGGAGATCCTTTGAGAATCAAACGTGTCTTCATAGATGGAAAATGTGATCTTAC
TTCTTTTATTAAACAATTGGAAAATCCAAGATACATCGTATGCCAAAAGTCTAAAAAACCCACACAGGGAAATTCTCCCT
ATTCCTATTAA

Upstream 100 bases:

>100_bases
TCAAACCGTCTGCGATACGGCAAAACCGGATCGATATCGGAAAGAAAAATTACCTCGGCAAAATGCCGCTTAAAAGTAAA
CCACACTAACAGAGGACTTC

Downstream 100 bases:

>100_bases
AATTTTTTAAATTTATCTCCCAAAATAAATTTTTCTTTCTTGGAGAATTATTATGATTTCATCGTGGAAGTATAGTTTTG
TTTATTGTAAATCTAAGTAA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKQSFVILRWPIFWIGTFWITFNVCNSPFREPQTSSKTNPNGIPILIYHEIVTDPKKESGETVISLQKFEEQMKYLFSKG
YNPITMKDLLSYIRKEKVLPDKSVVLNFDDGWKNVLNAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPRF
EIGSHTYSHPWNPNDNLVTWVDNRVDGKSEKDALFELKESKRILESKLDILVDYIAWPCGWYNDKLVQLAVQSGYKAILT
TEDGTNLPGGDPLRIKRVFIDGKCDLTSFIKQLENPRYIVCQKSKKPTQGNSPYSY

Sequences:

>Translated_296_residues
MKQSFVILRWPIFWIGTFWITFNVCNSPFREPQTSSKTNPNGIPILIYHEIVTDPKKESGETVISLQKFEEQMKYLFSKG
YNPITMKDLLSYIRKEKVLPDKSVVLNFDDGWKNVLNAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPRF
EIGSHTYSHPWNPNDNLVTWVDNRVDGKSEKDALFELKESKRILESKLDILVDYIAWPCGWYNDKLVQLAVQSGYKAILT
TEDGTNLPGGDPLRIKRVFIDGKCDLTSFIKQLENPRYIVCQKSKKPTQGNSPYSY
>Mature_296_residues
MKQSFVILRWPIFWIGTFWITFNVCNSPFREPQTSSKTNPNGIPILIYHEIVTDPKKESGETVISLQKFEEQMKYLFSKG
YNPITMKDLLSYIRKEKVLPDKSVVLNFDDGWKNVLNAVPVLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPRF
EIGSHTYSHPWNPNDNLVTWVDNRVDGKSEKDALFELKESKRILESKLDILVDYIAWPCGWYNDKLVQLAVQSGYKAILT
TEDGTNLPGGDPLRIKRVFIDGKCDLTSFIKQLENPRYIVCQKSKKPTQGNSPYSY

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=257, Percent_Identity=29.1828793774319, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787260, Length=262, Percent_Identity=24.4274809160305, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 34101; Mature: 34101

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSFVILRWPIFWIGTFWITFNVCNSPFREPQTSSKTNPNGIPILIYHEIVTDPKKESG
CCCCEEEEECHHHHHEEHHEEEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCC
ETVISLQKFEEQMKYLFSKGYNPITMKDLLSYIRKEKVLPDKSVVLNFDDGWKNVLNAVP
CEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHH
VLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPRFEIGSHTYSHPWNPNDNLVTW
HHHCCCCCCEEEEEECCCCCCCCCEECHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEE
VDNRVDGKSEKDALFELKESKRILESKLDILVDYIAWPCGWYNDKLVQLAVQSGYKAILT
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEE
TEDGTNLPGGDPLRIKRVFIDGKCDLTSFIKQLENPRYIVCQKSKKPTQGNSPYSY
ECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKQSFVILRWPIFWIGTFWITFNVCNSPFREPQTSSKTNPNGIPILIYHEIVTDPKKESG
CCCCEEEEECHHHHHEEHHEEEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCC
ETVISLQKFEEQMKYLFSKGYNPITMKDLLSYIRKEKVLPDKSVVLNFDDGWKNVLNAVP
CEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHH
VLNRYSFPASFWIIAGPKGIGNGEYLEWSDIQELAKNPRFEIGSHTYSHPWNPNDNLVTW
HHHCCCCCCEEEEEECCCCCCCCCEECHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEE
VDNRVDGKSEKDALFELKESKRILESKLDILVDYIAWPCGWYNDKLVQLAVQSGYKAILT
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEE
TEDGTNLPGGDPLRIKRVFIDGKCDLTSFIKQLENPRYIVCQKSKKPTQGNSPYSY
ECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]