| Definition | Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008508 |
| Length | 3,614,446 |
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The map label for this gene is dnaB [H]
Identifier: 116327960
GI number: 116327960
Start: 1469313
End: 1470641
Strand: Direct
Name: dnaB [H]
Synonym: LBL_1249
Alternate gene names: 116327960
Gene position: 1469313-1470641 (Clockwise)
Preceding gene: 116327959
Following gene: 116327961
Centisome position: 40.65
GC content: 46.35
Gene sequence:
>1329_bases ATGCAGTCCGATTCTTTATACGAACCGGAATCCGAAAGGGCCTTTTTAGGATTTCTGCTTCTCAAAGGGACGGACAATCT GATCGATATTCCAGTCGCTCCCGAAGACTTTTATGTGGACCTTCACAGAAGGGTTTATCGGGCGATCGGTGATCTTGTTG ATAAGAGAATCACCATCGATCCGGTTTCCGTTCTGAACTTCCTGAAGGAAAATTCCCTTCTTAAAGACGAAGAAAAAGAA TTCAATTATATTTATTCTCTCTACCGTGATACGGTAGTCACTCAGCCGCTTACGTATTATGCCGCTCGGATCAAACGTTT TTCCGAACGCAGGACATACGCCAAAATTCTTCAAGAATCCTTAGAGTTCGTTCGTAAAGAACCCGGAGACAACGAATCCG TCTTTAACACGGTAGAAAAGAATCTTACCGAGATCTCCAGAAGTATAGACGCGAAGGGTCTGCTTCCGGTCTCTTCGGAT AAGACCGCTCTTTCCGATTACATCATGGAGATCATGAAGAATCGGGGACAGATCACCGGACTTCGTACCAACTTCACCAA GTTGGACGAGGCGACTTCGGGACTCAAAGAACACGAGCTGATGATTCTTGCCGCTCGTCCCGGGAACGGGAAAACCACAT TCGCTCTCAACATAGCGTCTAACGTTGCACTTGTTTACAATCAGCCCGTTGTCATATTTTCTTTGGAGATGAGTCGGATC GAACTTCTTCTCAAGATGGTTTGCGCCGACGCCCAAGTGGAATCCATGAAGCTCAAGAAATCCGAACTTACCCGGGCGGA TGCTCCCAAACTTTTAGAATCCATCGTTCGAGTCACCGCGGCTCCGATCTATATCGACGATTCGGGTGGTTTGACGATAG ACGATTTCAAAGGTCGCGTGCGTAAACTTTTGACCACAGAAAAGATCGGTTTGATTGTTGTGGATTATTTACAACTTATG AGTGATCCGAAAAACAAGGATGGAGGTCGTCAACAAGAGGTAGCTTCGATCTCTCGTTCTCTTAAACAGATGGCCAAGGA AGCAAGATGTCCGATCATCGCCCTTTCTCAGATGTCCCGAGCGGTGGAACAAAGATCTAAGGATCAAAAACCGCAACTTT CCGATCTCCGAGAATCGGGTGCGATCGAGCAAGACGCGGATATCGTTTCGTTTATCTATCGAGAAGAAAAAGTAAAAGGA GAGGACGAGATCAGTCCAGAGATGCGGGGGAAGGCGGAAATTATCATCGCCAAAAACCGCTCCGGTCCTATCGGTTCTTT TCATCTTGCCTTTAGGCCCGAGCTTAGCAGATTTGATAATATAGATTAA
Upstream 100 bases:
>100_bases TCTGGGTTCCTACAAAATCAAGATTCGTCTTGCGGAAGGAATTCAGCCCGTAATTACACTTCACGTTAAAAAAGAAGAAG AGTGATTTTTCTTTAGGGAC
Downstream 100 bases:
>100_bases TGAGGAAACGGAATTCATTGGAACAGCAAAACTATAAAAATCGTTCTTGGGCCGGAGAATTAAACGAGTCCCAAGTAGGT AAAAAAATCTTTCTTTACGG
Product: replicative DNA helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MQSDSLYEPESERAFLGFLLLKGTDNLIDIPVAPEDFYVDLHRRVYRAIGDLVDKRITIDPVSVLNFLKENSLLKDEEKE FNYIYSLYRDTVVTQPLTYYAARIKRFSERRTYAKILQESLEFVRKEPGDNESVFNTVEKNLTEISRSIDAKGLLPVSSD KTALSDYIMEIMKNRGQITGLRTNFTKLDEATSGLKEHELMILAARPGNGKTTFALNIASNVALVYNQPVVIFSLEMSRI ELLLKMVCADAQVESMKLKKSELTRADAPKLLESIVRVTAAPIYIDDSGGLTIDDFKGRVRKLLTTEKIGLIVVDYLQLM SDPKNKDGGRQQEVASISRSLKQMAKEARCPIIALSQMSRAVEQRSKDQKPQLSDLRESGAIEQDADIVSFIYREEKVKG EDEISPEMRGKAEIIIAKNRSGPIGSFHLAFRPELSRFDNID
Sequences:
>Translated_442_residues MQSDSLYEPESERAFLGFLLLKGTDNLIDIPVAPEDFYVDLHRRVYRAIGDLVDKRITIDPVSVLNFLKENSLLKDEEKE FNYIYSLYRDTVVTQPLTYYAARIKRFSERRTYAKILQESLEFVRKEPGDNESVFNTVEKNLTEISRSIDAKGLLPVSSD KTALSDYIMEIMKNRGQITGLRTNFTKLDEATSGLKEHELMILAARPGNGKTTFALNIASNVALVYNQPVVIFSLEMSRI ELLLKMVCADAQVESMKLKKSELTRADAPKLLESIVRVTAAPIYIDDSGGLTIDDFKGRVRKLLTTEKIGLIVVDYLQLM SDPKNKDGGRQQEVASISRSLKQMAKEARCPIIALSQMSRAVEQRSKDQKPQLSDLRESGAIEQDADIVSFIYREEKVKG EDEISPEMRGKAEIIIAKNRSGPIGSFHLAFRPELSRFDNID >Mature_442_residues MQSDSLYEPESERAFLGFLLLKGTDNLIDIPVAPEDFYVDLHRRVYRAIGDLVDKRITIDPVSVLNFLKENSLLKDEEKE FNYIYSLYRDTVVTQPLTYYAARIKRFSERRTYAKILQESLEFVRKEPGDNESVFNTVEKNLTEISRSIDAKGLLPVSSD KTALSDYIMEIMKNRGQITGLRTNFTKLDEATSGLKEHELMILAARPGNGKTTFALNIASNVALVYNQPVVIFSLEMSRI ELLLKMVCADAQVESMKLKKSELTRADAPKLLESIVRVTAAPIYIDDSGGLTIDDFKGRVRKLLTTEKIGLIVVDYLQLM SDPKNKDGGRQQEVASISRSLKQMAKEARCPIIALSQMSRAVEQRSKDQKPQLSDLRESGAIEQDADIVSFIYREEKVKG EDEISPEMRGKAEIIIAKNRSGPIGSFHLAFRPELSRFDNID
Specific function: Participates In Initiation And Elongation During Chromosome Replication; It Exhibits DNA-Dependent ATPase Activity And Contains Distinct Active Sites For ATP Binding, DNA Binding, And Interaction With DNAc Protein, Primase, And Other Prepriming Proteins.
COG id: COG0305
COG function: function code L; Replicative DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 SF4 helicase domain [H]
Homologues:
Organism=Escherichia coli, GI1790486, Length=439, Percent_Identity=35.7630979498861, Blast_Score=236, Evalue=2e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR007692 - InterPro: IPR007694 - InterPro: IPR007693 - InterPro: IPR016136 [H]
Pfam domain/function: PF00772 DnaB; PF03796 DnaB_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 49977; Mature: 49977
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSDSLYEPESERAFLGFLLLKGTDNLIDIPVAPEDFYVDLHRRVYRAIGDLVDKRITID CCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC PVSVLNFLKENSLLKDEEKEFNYIYSLYRDTVVTQPLTYYAARIKRFSERRTYAKILQES HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LEFVRKEPGDNESVFNTVEKNLTEISRSIDAKGLLPVSSDKTALSDYIMEIMKNRGQITG HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE LRTNFTKLDEATSGLKEHELMILAARPGNGKTTFALNIASNVALVYNQPVVIFSLEMSRI EECCHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCEEEEEECHHHH ELLLKMVCADAQVESMKLKKSELTRADAPKLLESIVRVTAAPIYIDDSGGLTIDDFKGRV HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHH RKLLTTEKIGLIVVDYLQLMSDPKNKDGGRQQEVASISRSLKQMAKEARCPIIALSQMSR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHH AVEQRSKDQKPQLSDLRESGAIEQDADIVSFIYREEKVKGEDEISPEMRGKAEIIIAKNR HHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC SGPIGSFHLAFRPELSRFDNID CCCCCEEEEEECCCHHHCCCCC >Mature Secondary Structure MQSDSLYEPESERAFLGFLLLKGTDNLIDIPVAPEDFYVDLHRRVYRAIGDLVDKRITID CCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC PVSVLNFLKENSLLKDEEKEFNYIYSLYRDTVVTQPLTYYAARIKRFSERRTYAKILQES HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LEFVRKEPGDNESVFNTVEKNLTEISRSIDAKGLLPVSSDKTALSDYIMEIMKNRGQITG HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE LRTNFTKLDEATSGLKEHELMILAARPGNGKTTFALNIASNVALVYNQPVVIFSLEMSRI EECCHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCEEEEEECHHHH ELLLKMVCADAQVESMKLKKSELTRADAPKLLESIVRVTAAPIYIDDSGGLTIDDFKGRV HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHH RKLLTTEKIGLIVVDYLQLMSDPKNKDGGRQQEVASISRSLKQMAKEARCPIIALSQMSR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHH AVEQRSKDQKPQLSDLRESGAIEQDADIVSFIYREEKVKGEDEISPEMRGKAEIIIAKNR HHHHHHCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC SGPIGSFHLAFRPELSRFDNID CCCCCEEEEEECCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7584024; 9384377; 1312531 [H]