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The map label for this gene is yibD [C]

Identifier: 116327923

GI number: 116327923

Start: 1425216

End: 1426121

Strand: Direct

Name: yibD [C]

Synonym: LBL_1209

Alternate gene names: 116327923

Gene position: 1425216-1426121 (Clockwise)

Preceding gene: 116327922

Following gene: 116327924

Centisome position: 39.43

GC content: 35.65

Gene sequence:

>906_bases
ATGAAAGATATCATAGTAAGCATTGTGATTCCAACTTACAATAGGGCAAATGATTTAAGGCGATGTCTTTTTAGTTTGGT
TTCTCAAACATACCGGAATTTTGAAGTAATCGTTTGCGATGATGGATCGACGGATGATTCCGAGGTCGTTGTAAAGGAAT
TTCAATTTTCTCTTAAAATCACTTATTATCATTTGAAGAATTTTGGGGGGCCGTCCAGACCAAGAAATTTTGGAATCCAG
AAGGCAAAAGGCAAATACATTGCCTTATTGGACTCAGATGACTGGTGGGCTCCGAAAAAGTTGGAAATGTCCGTTTCCAT
TTTGGAATCTAAAAATATCGATTTAGTCTATCACGATTTATATAAAATAAATTCAACTTCACAATTTTTATTTTGGAAAA
AAGAAAAGACGAGAATCTTAAAGTCACCGGTTTTGCGAGATCTAATTGTAAATGGAAACGCGATCAATAATTCGAGTGTG
GTCGTACGTAAATCTGTTTTAGATGTGGTAGGAAGTTTGGATGAAACACCGGATTTGATTGCAGGTGAGGATTATGATTA
TTGGTTGAGGATCGCAAAAATTACTGATCGCTTTTATAGAATTCCGCGAACCCTCGGTTATTACTGGACTGGAGGTGGTA
ATTTGACAAATCCAATACGGTCTTTGAATATACTTCGCACTTTGCAGAAAAAATATCAATTGGATTTTGATAGATACGTT
TCGAATCGTGGTAAAACTCCGTGGTGGTTTTATAAAACTAGATTCTTGGTCCATCTATCTTTAGGCAATTTGCAGGACGC
AAAGAATGAAATTGCGTTTCTGCAAGAGGCACCACTTCGAATCAAATGGAAATATGTAATTCTATTTCGACTCAAGAATT
TATTGGTTTTTTTTCGATTTCAATAA

Upstream 100 bases:

>100_bases
CTCTTTATTTTGTATAGATCCAAATTTGCCCAAATGGAAAAAACTTTTGGCAATTGATTGAGGTTAGGAAAAATTTTAAT
TATATGACTAAAATCAGATT

Downstream 100 bases:

>100_bases
ACCTTTTCTTGTTCGAATTTTAATCATCAATCATTAAGAGGCAAAATGCAAAATTCAAAAGAGAAGATTCGAGTGTGTAA
GAATTGCGTAATGGACACTA

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKDIIVSIVIPTYNRANDLRRCLFSLVSQTYRNFEVIVCDDGSTDDSEVVVKEFQFSLKITYYHLKNFGGPSRPRNFGIQ
KAKGKYIALLDSDDWWAPKKLEMSVSILESKNIDLVYHDLYKINSTSQFLFWKKEKTRILKSPVLRDLIVNGNAINNSSV
VVRKSVLDVVGSLDETPDLIAGEDYDYWLRIAKITDRFYRIPRTLGYYWTGGGNLTNPIRSLNILRTLQKKYQLDFDRYV
SNRGKTPWWFYKTRFLVHLSLGNLQDAKNEIAFLQEAPLRIKWKYVILFRLKNLLVFFRFQ

Sequences:

>Translated_301_residues
MKDIIVSIVIPTYNRANDLRRCLFSLVSQTYRNFEVIVCDDGSTDDSEVVVKEFQFSLKITYYHLKNFGGPSRPRNFGIQ
KAKGKYIALLDSDDWWAPKKLEMSVSILESKNIDLVYHDLYKINSTSQFLFWKKEKTRILKSPVLRDLIVNGNAINNSSV
VVRKSVLDVVGSLDETPDLIAGEDYDYWLRIAKITDRFYRIPRTLGYYWTGGGNLTNPIRSLNILRTLQKKYQLDFDRYV
SNRGKTPWWFYKTRFLVHLSLGNLQDAKNEIAFLQEAPLRIKWKYVILFRLKNLLVFFRFQ
>Mature_301_residues
MKDIIVSIVIPTYNRANDLRRCLFSLVSQTYRNFEVIVCDDGSTDDSEVVVKEFQFSLKITYYHLKNFGGPSRPRNFGIQ
KAKGKYIALLDSDDWWAPKKLEMSVSILESKNIDLVYHDLYKINSTSQFLFWKKEKTRILKSPVLRDLIVNGNAINNSSV
VVRKSVLDVVGSLDETPDLIAGEDYDYWLRIAKITDRFYRIPRTLGYYWTGGGNLTNPIRSLNILRTLQKKYQLDFDRYV
SNRGKTPWWFYKTRFLVHLSLGNLQDAKNEIAFLQEAPLRIKWKYVILFRLKNLLVFFRFQ

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=112, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788372, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35369; Mature: 35369

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIIVSIVIPTYNRANDLRRCLFSLVSQTYRNFEVIVCDDGSTDDSEVVVKEFQFSLKI
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHEEEEEEEEEE
TYYHLKNFGGPSRPRNFGIQKAKGKYIALLDSDDWWAPKKLEMSVSILESKNIDLVYHDL
EEEEEECCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEE
YKINSTSQFLFWKKEKTRILKSPVLRDLIVNGNAINNSSVVVRKSVLDVVGSLDETPDLI
EEECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCC
AGEDYDYWLRIAKITDRFYRIPRTLGYYWTGGGNLTNPIRSLNILRTLQKKYQLDFDRYV
CCCCHHHHHHHHHHHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
SNRGKTPWWFYKTRFLVHLSLGNLQDAKNEIAFLQEAPLRIKWKYVILFRLKNLLVFFRF
HCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEEHHCEEEEEEE
Q
C
>Mature Secondary Structure
MKDIIVSIVIPTYNRANDLRRCLFSLVSQTYRNFEVIVCDDGSTDDSEVVVKEFQFSLKI
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHEEEEEEEEEE
TYYHLKNFGGPSRPRNFGIQKAKGKYIALLDSDDWWAPKKLEMSVSILESKNIDLVYHDL
EEEEEECCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEEE
YKINSTSQFLFWKKEKTRILKSPVLRDLIVNGNAINNSSVVVRKSVLDVVGSLDETPDLI
EEECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCC
AGEDYDYWLRIAKITDRFYRIPRTLGYYWTGGGNLTNPIRSLNILRTLQKKYQLDFDRYV
CCCCHHHHHHHHHHHHHHHHCCHHHCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHH
SNRGKTPWWFYKTRFLVHLSLGNLQDAKNEIAFLQEAPLRIKWKYVILFRLKNLLVFFRF
HCCCCCCEEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEEEEHHCEEEEEEE
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA