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The map label for this gene is yphC [C]

Identifier: 116327893

GI number: 116327893

Start: 1391950

End: 1392990

Strand: Direct

Name: yphC [C]

Synonym: LBL_1178

Alternate gene names: 116327893

Gene position: 1391950-1392990 (Clockwise)

Preceding gene: 116327892

Following gene: 116327894

Centisome position: 38.51

GC content: 34.1

Gene sequence:

>1041_bases
TTGAGGCAAAAATTGAAACAAGAAAGTATAATAGTTGAGTTACCGGAACCTCAAAAAATAATTTTTAAAATTGTTGAATT
ACATCTCAGTGAAATGCGTGAAGATGAAGTTTATGCAGAAACAATTTACTCTGCTATTTCTACGGGAACTGAATTATCTG
CATATAAGGGAGAAAAGCCGATTCGGCCAGTTAGTAATCCTTATCCTAGAGTAGTCGGATATTGTAATGTTGCAGAAATT
AAGGAAGTTGGGTCCAAAGTCAGCCTATATATGGTGGGAGATTATATACTTACTTTTCAATCTCATAGAACTTCCTTCAT
TTGTAAGGAATCTGATGTTATTTTAAAAATTCCTAAAAACGGTGTTTCTTTGCAACATGCGGCGACAACTTTCTTATATC
ACCTAGGTTATGAAACTTTTTTAAAAAGTAATTTTAAGCCAGGATTTAATGTCGCTGTGATTGGATTGGGAACTTTAGGG
TTGGCTACGGTTAATATCGCAAACTTGATCGGATGTAAGATTTTTTCTTTCTCCAATTATCCGGATAATCTAAAATTAGC
AAAAGAATTCGGTTCTCATCAATCTTATTTAAAGAATGAGAATGGAATTCAGAAATCTATTTATGAATTAACATACGGAA
CGGGGATTGATATAGTGATTACTACTTCTAATACTTGGGACGATTGGAAATTAGCTTTAGAGCTGGCTAGGGATGAGGGA
GTTATCGGAGTTATCGGTTTTCCTGGTCGAGGTCAAGTCTTGCCTGATTTTAATCCGTTGGAACCTCAGTATTTATATCA
CAAAAAACTAACGGTAGTTTACTCAGGTTATATGCCAGACTATTTGATTCCAGCTAAGGATATTCGTTTTACCCGAAAAC
GAAATTGTCAATTTATATTGGATCAAATCATCGATAATAAGTTGTTTCCAGGAAAGCTGATTCATAAAGAATATAGGTGG
AAGGATATAGAAACTGCTTACAAGGATATGCTAGAAAGAAAACAACCCATTTATACTTCTATCCTCAATTGGAAAAAATG
A

Upstream 100 bases:

>100_bases
AACACGAAGGTGTAAGTCGCCAAAAAATATATATCGATGGCGCCTATCATGATGATATCAAGATGGCGATACTTGCAGAA
GATTTTTTTAAAAGATTAGA

Downstream 100 bases:

>100_bases
GTTTAAGATTAAGAACTGCATTAATCGGTTGTGGAAGAATTGGAGCTTTTACTTCCCTTGAGTTAAAAAAAAGTTTGCCT
ATCGGTTGGTTACCCTATAA

Product: Zinc-binding dehydrogenase

Products: NA

Alternate protein names: Alcohol Dehydrogenase; Alcohol Dehydrogenase GroES Domain Protein; Oxidoreductase Domain Protein; Mycothiol-Dependent Formaldehyde Dehydrogenase; Oxidoreductase Domain-Containing Protein; Alcohol Dehydrogenase Zinc-Containing Protein; Polyketide Synthase

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MRQKLKQESIIVELPEPQKIIFKIVELHLSEMREDEVYAETIYSAISTGTELSAYKGEKPIRPVSNPYPRVVGYCNVAEI
KEVGSKVSLYMVGDYILTFQSHRTSFICKESDVILKIPKNGVSLQHAATTFLYHLGYETFLKSNFKPGFNVAVIGLGTLG
LATVNIANLIGCKIFSFSNYPDNLKLAKEFGSHQSYLKNENGIQKSIYELTYGTGIDIVITTSNTWDDWKLALELARDEG
VIGVIGFPGRGQVLPDFNPLEPQYLYHKKLTVVYSGYMPDYLIPAKDIRFTRKRNCQFILDQIIDNKLFPGKLIHKEYRW
KDIETAYKDMLERKQPIYTSILNWKK

Sequences:

>Translated_346_residues
MRQKLKQESIIVELPEPQKIIFKIVELHLSEMREDEVYAETIYSAISTGTELSAYKGEKPIRPVSNPYPRVVGYCNVAEI
KEVGSKVSLYMVGDYILTFQSHRTSFICKESDVILKIPKNGVSLQHAATTFLYHLGYETFLKSNFKPGFNVAVIGLGTLG
LATVNIANLIGCKIFSFSNYPDNLKLAKEFGSHQSYLKNENGIQKSIYELTYGTGIDIVITTSNTWDDWKLALELARDEG
VIGVIGFPGRGQVLPDFNPLEPQYLYHKKLTVVYSGYMPDYLIPAKDIRFTRKRNCQFILDQIIDNKLFPGKLIHKEYRW
KDIETAYKDMLERKQPIYTSILNWKK
>Mature_346_residues
MRQKLKQESIIVELPEPQKIIFKIVELHLSEMREDEVYAETIYSAISTGTELSAYKGEKPIRPVSNPYPRVVGYCNVAEI
KEVGSKVSLYMVGDYILTFQSHRTSFICKESDVILKIPKNGVSLQHAATTFLYHLGYETFLKSNFKPGFNVAVIGLGTLG
LATVNIANLIGCKIFSFSNYPDNLKLAKEFGSHQSYLKNENGIQKSIYELTYGTGIDIVITTSNTWDDWKLALELARDEG
VIGVIGFPGRGQVLPDFNPLEPQYLYHKKLTVVYSGYMPDYLIPAKDIRFTRKRNCQFILDQIIDNKLFPGKLIHKEYRW
KDIETAYKDMLERKQPIYTSILNWKK

Specific function: Unknown

COG id: COG1063

COG function: function code ER; Threonine dehydrogenase and related Zn-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39591; Mature: 39591

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQKLKQESIIVELPEPQKIIFKIVELHLSEMREDEVYAETIYSAISTGTELSAYKGEKP
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCC
IRPVSNPYPRVVGYCNVAEIKEVGSKVSLYMVGDYILTFQSHRTSFICKESDVILKIPKN
CCCCCCCCCHHEEECCHHHHHHCCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEECCC
GVSLQHAATTFLYHLGYETFLKSNFKPGFNVAVIGLGTLGLATVNIANLIGCKIFSFSNY
CCCHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHEEEEEECCC
PDNLKLAKEFGSHQSYLKNENGIQKSIYELTYGTGIDIVITTSNTWDDWKLALELARDEG
CCCHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHEECCCCC
VIGVIGFPGRGQVLPDFNPLEPQYLYHKKLTVVYSGYMPDYLIPAKDIRFTRKRNCQFIL
EEEEEECCCCCCCCCCCCCCCCCHHHHEEEEEEEECCCCCCCCCHHHCCHHHHCCHHHHH
DQIIDNKLFPGKLIHKEYRWKDIETAYKDMLERKQPIYTSILNWKK
HHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure
MRQKLKQESIIVELPEPQKIIFKIVELHLSEMREDEVYAETIYSAISTGTELSAYKGEKP
CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCC
IRPVSNPYPRVVGYCNVAEIKEVGSKVSLYMVGDYILTFQSHRTSFICKESDVILKIPKN
CCCCCCCCCHHEEECCHHHHHHCCCEEEEEEECCEEEEEECCCCEEEEECCCEEEEECCC
GVSLQHAATTFLYHLGYETFLKSNFKPGFNVAVIGLGTLGLATVNIANLIGCKIFSFSNY
CCCHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHEEEEEECCC
PDNLKLAKEFGSHQSYLKNENGIQKSIYELTYGTGIDIVITTSNTWDDWKLALELARDEG
CCCHHHHHHHCCHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHEECCCCC
VIGVIGFPGRGQVLPDFNPLEPQYLYHKKLTVVYSGYMPDYLIPAKDIRFTRKRNCQFIL
EEEEEECCCCCCCCCCCCCCCCCHHHHEEEEEEEECCCCCCCCCHHHCCHHHHCCHHHHH
DQIIDNKLFPGKLIHKEYRWKDIETAYKDMLERKQPIYTSILNWKK
HHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA