Click here to switch to the map view.

The map label for this gene is spsF [H]

Identifier: 116327885

GI number: 116327885

Start: 1381314

End: 1382006

Strand: Direct

Name: spsF [H]

Synonym: LBL_1169

Alternate gene names: 116327885

Gene position: 1381314-1382006 (Clockwise)

Preceding gene: 116327884

Following gene: 116327886

Centisome position: 38.22

GC content: 37.23

Gene sequence:

>693_bases
ATGGGTTCGTCAACACTTGCCATAGTTCAAGCAAGGATGGGCTCTACAAGACTTCCGGGGAAAATGTTATTAAAACTTGG
ACAATTCACTATTTTAGAATGGGTCCTTCGGCGTCTCAAGAAATCAAAACAATTAACTGAAATCATATTAGCGACAAGTA
ATCTATCGATTGATGATTCTTTGGAAGTTATCGCCAAAAGTCTTGGTGTAACAGTCTTTCGTGGATCTGAGACAGACGTG
TTGGGTCGATTTGTATTGGCTAGTAAAAAGTCGGTCTCAAAAAATATCGTAAGAGTTTGCGCAGATAATCCGTTTTTAGA
TTTCAAAGTTATTGACGACTTAATTGAGGGATTTGCTAACGCAGACTACGATTACGGTTTTAATCATATTCCTTGGGGTG
AAAATTCTTTTATTGATGGGGTCGGTGTAGAGATTTTAACGAAAAGATTATTAGAAGAAATCGATGAATTTGCAAAATTG
CCAGAAGAAAGAGAGCATGTGACCCGTTTTATTTGGAATCACTGGAATCGTTATCGGATTTATTCTCCGGTTGCCAATGA
AAAATTTCGTTTTCCGGAACTTTCATTAGATGTTGATACGAAAGAAGATTATGAACTGTTTCGGATGCACCTTGAGGATT
ACTCAGGACTTCCTGAAGACTATGACGTTGAAGAATTAATTTCGAAATTGTGA

Upstream 100 bases:

>100_bases
AGCCCTATTTTTTGGGATGATGTAATTGGAAGAGTGATCAATAGAGATCTTTTAGAAGACCATATTTTAAATTGGGAAGA
TTTGGTTCAACTTTAGGAAA

Downstream 100 bases:

>100_bases
TATGACAGTATTTGAAGGAGTCTTGGAAAATGGATTACCATGATTATGTGATAAAAGATGGGGAGTTCGTCGGAAAGTTT
GAGGAAATGTATTCCTCATG

Product: cytidylyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MGSSTLAIVQARMGSTRLPGKMLLKLGQFTILEWVLRRLKKSKQLTEIILATSNLSIDDSLEVIAKSLGVTVFRGSETDV
LGRFVLASKKSVSKNIVRVCADNPFLDFKVIDDLIEGFANADYDYGFNHIPWGENSFIDGVGVEILTKRLLEEIDEFAKL
PEEREHVTRFIWNHWNRYRIYSPVANEKFRFPELSLDVDTKEDYELFRMHLEDYSGLPEDYDVEELISKL

Sequences:

>Translated_230_residues
MGSSTLAIVQARMGSTRLPGKMLLKLGQFTILEWVLRRLKKSKQLTEIILATSNLSIDDSLEVIAKSLGVTVFRGSETDV
LGRFVLASKKSVSKNIVRVCADNPFLDFKVIDDLIEGFANADYDYGFNHIPWGENSFIDGVGVEILTKRLLEEIDEFAKL
PEEREHVTRFIWNHWNRYRIYSPVANEKFRFPELSLDVDTKEDYELFRMHLEDYSGLPEDYDVEELISKL
>Mature_229_residues
GSSTLAIVQARMGSTRLPGKMLLKLGQFTILEWVLRRLKKSKQLTEIILATSNLSIDDSLEVIAKSLGVTVFRGSETDVL
GRFVLASKKSVSKNIVRVCADNPFLDFKVIDDLIEGFANADYDYGFNHIPWGENSFIDGVGVEILTKRLLEEIDEFAKLP
EEREHVTRFIWNHWNRYRIYSPVANEKFRFPELSLDVDTKEDYELFRMHLEDYSGLPEDYDVEELISKL

Specific function: Unknown

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CMP-NeuNAc synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003329 [H]

Pfam domain/function: PF02348 CTP_transf_3 [H]

EC number: NA

Molecular weight: Translated: 26472; Mature: 26340

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSSTLAIVQARMGSTRLPGKMLLKLGQFTILEWVLRRLKKSKQLTEIILATSNLSIDDS
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LEVIAKSLGVTVFRGSETDVLGRFVLASKKSVSKNIVRVCADNPFLDFKVIDDLIEGFAN
HHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
ADYDYGFNHIPWGENSFIDGVGVEILTKRLLEEIDEFAKLPEEREHVTRFIWNHWNRYRI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEE
YSPVANEKFRFPELSLDVDTKEDYELFRMHLEDYSGLPEDYDVEELISKL
ECCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC
>Mature Secondary Structure 
GSSTLAIVQARMGSTRLPGKMLLKLGQFTILEWVLRRLKKSKQLTEIILATSNLSIDDS
CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
LEVIAKSLGVTVFRGSETDVLGRFVLASKKSVSKNIVRVCADNPFLDFKVIDDLIEGFAN
HHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
ADYDYGFNHIPWGENSFIDGVGVEILTKRLLEEIDEFAKLPEEREHVTRFIWNHWNRYRI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEE
YSPVANEKFRFPELSLDVDTKEDYELFRMHLEDYSGLPEDYDVEELISKL
ECCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]