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The map label for this gene is yqxC [H]

Identifier: 116327488

GI number: 116327488

Start: 807114

End: 807893

Strand: Direct

Name: yqxC [H]

Synonym: LBL_0712

Alternate gene names: 116327488

Gene position: 807114-807893 (Clockwise)

Preceding gene: 116327487

Following gene: 116327489

Centisome position: 22.33

GC content: 38.85

Gene sequence:

>780_bases
TTGGCCAAAGAAAAAATTAGACTCGATGTTCTTCTCCTAGAACGGGGACTTGCGGATTCTCCGGAAAAATCGAGAAGTTT
GATTCTTTCCGGTTCCGTCTTGGTAAACGAACAAAAAATAACTAAAGTCGGATTAAAATTTCCAAAAGATTCGGAAATTA
AAATCCTCAATGTCATACGAGAATATGTAAGTAGGGGTGCGTATAAATTATTGAGGGCTTTCGAAATTTTTCCCTTACAG
GTGGATGGAAAACTTTGTGTAGACCTTGGCGCTTCGACGGGAGGATTTACACAAGTGCTTTTGGAAAAGGGAGCCTGGAA
AGTTTTTGCGTGCGACGTAGGTTATGGTCAGTTAGCCGAAAAGTTGCGAAACCATCCTTCCGTAATCGTGAAAGATCGTT
TTCATCTGAAAAGATTATCCTCTTCGGAAATCGAATGGGAGACGAATCGTTTTCAAGCGCCTCATCCCGAATCGATCGTA
ATTGTAACGGATCTCAGTTTCATTTCTCTCCGGTCTGTTTTTCCGGTATTTCGAAAATTGAGAGAGGAGAAATATATTCC
GAAATTAGAATGTATTACTTTGATAAAACCTCAGTTTGAATCGGATAAAAAAGATCTTACGAAAGGAATTTTAAGAGATC
CTAAAATTCGAATTAGGATTGTTCGTTCTCTCTGTGGCTATCTCAAAAAAGAGATCGGAGGTGTCATTTTAGGTTTAGAA
TGGTCTCCGATTGAGGGTAGATCCGGAAATAAAGAGATTCTTTTGTATTGGAAATTGTAG

Upstream 100 bases:

>100_bases
AAAATGGTCCAAGAACTTCAAAAAAATCTAATTTCCATCTCTTCTAGTTTTGTTTCCACGGACGAAGAGGGAACATTCTT
TCAGGGGCTTCCGATTTACA

Downstream 100 bases:

>100_bases
CGGGGAAAATCGAAGTTTTAAGAATTGAAATTCGTACTTTATCTTTTGCATAAGACCGTAATAGTCGAGTTTTCAAATTT
TGTTCTTGTATGAATCGTGA

Product: rRNA methylase/hemolysin-tylA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAKEKIRLDVLLLERGLADSPEKSRSLILSGSVLVNEQKITKVGLKFPKDSEIKILNVIREYVSRGAYKLLRAFEIFPLQ
VDGKLCVDLGASTGGFTQVLLEKGAWKVFACDVGYGQLAEKLRNHPSVIVKDRFHLKRLSSSEIEWETNRFQAPHPESIV
IVTDLSFISLRSVFPVFRKLREEKYIPKLECITLIKPQFESDKKDLTKGILRDPKIRIRIVRSLCGYLKKEIGGVILGLE
WSPIEGRSGNKEILLYWKL

Sequences:

>Translated_259_residues
MAKEKIRLDVLLLERGLADSPEKSRSLILSGSVLVNEQKITKVGLKFPKDSEIKILNVIREYVSRGAYKLLRAFEIFPLQ
VDGKLCVDLGASTGGFTQVLLEKGAWKVFACDVGYGQLAEKLRNHPSVIVKDRFHLKRLSSSEIEWETNRFQAPHPESIV
IVTDLSFISLRSVFPVFRKLREEKYIPKLECITLIKPQFESDKKDLTKGILRDPKIRIRIVRSLCGYLKKEIGGVILGLE
WSPIEGRSGNKEILLYWKL
>Mature_258_residues
AKEKIRLDVLLLERGLADSPEKSRSLILSGSVLVNEQKITKVGLKFPKDSEIKILNVIREYVSRGAYKLLRAFEIFPLQV
DGKLCVDLGASTGGFTQVLLEKGAWKVFACDVGYGQLAEKLRNHPSVIVKDRFHLKRLSSSEIEWETNRFQAPHPESIVI
VTDLSFISLRSVFPVFRKLREEKYIPKLECITLIKPQFESDKKDLTKGILRDPKIRIRIVRSLCGYLKKEIGGVILGLEW
SPIEGRSGNKEILLYWKL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29536; Mature: 29405

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEKIRLDVLLLERGLADSPEKSRSLILSGSVLVNEQKITKVGLKFPKDSEIKILNVIR
CCCCHHEEEEEEECCCCCCCCCCCCEEEEECCEEECHHHHHHHCCCCCCCCCHHHHHHHH
EYVSRGAYKLLRAFEIFPLQVDGKLCVDLGASTGGFTQVLLEKGAWKVFACDVGYGQLAE
HHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
KLRNHPSVIVKDRFHLKRLSSSEIEWETNRFQAPHPESIVIVTDLSFISLRSVFPVFRKL
HHHCCCCEEEECCHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
REEKYIPKLECITLIKPQFESDKKDLTKGILRDPKIRIRIVRSLCGYLKKEIGGVILGLE
HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
WSPIEGRSGNKEILLYWKL
ECCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
AKEKIRLDVLLLERGLADSPEKSRSLILSGSVLVNEQKITKVGLKFPKDSEIKILNVIR
CCCHHEEEEEEECCCCCCCCCCCCEEEEECCEEECHHHHHHHCCCCCCCCCHHHHHHHH
EYVSRGAYKLLRAFEIFPLQVDGKLCVDLGASTGGFTQVLLEKGAWKVFACDVGYGQLAE
HHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
KLRNHPSVIVKDRFHLKRLSSSEIEWETNRFQAPHPESIVIVTDLSFISLRSVFPVFRKL
HHHCCCCEEEECCHHHHHCCCCCCEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHH
REEKYIPKLECITLIKPQFESDKKDLTKGILRDPKIRIRIVRSLCGYLKKEIGGVILGLE
HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
WSPIEGRSGNKEILLYWKL
ECCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]