Click here to switch to the map view.

The map label for this gene is yfcH [H]

Identifier: 116327407

GI number: 116327407

Start: 688729

End: 689652

Strand: Direct

Name: yfcH [H]

Synonym: LBL_0616

Alternate gene names: 116327407

Gene position: 688729-689652 (Clockwise)

Preceding gene: 116327405

Following gene: 116327416

Centisome position: 19.05

GC content: 43.18

Gene sequence:

>924_bases
ATGAATATAGGGATTGCGGGGGGGACCGGATTGATAGGAAGAACTCTTGCACTTCGATTACTTAAGACGGGGAATTTTGT
AAGAATTTTCAGTCGGTCTTCCGACATTCCTGGATTTTTCCGAGATAGGAAAAATTTGGAAATTGTGGGGGGAGGAGGTG
ATCCGAGGCCGGAGCATTTGGAAGGGTTAGATGGCATTGTAAATCTTGCCGGAGCGCCCATTGTAGGAGTTAGATGGACT
AAGAAAATGAAAGAGGAAATTCGTTCTTCCAGAGTGAATTATACTGAAAATTTAGTTTCTTCTGTTTCTAAAATTGTGGG
AACTCCGCCAAAAGTTTTTGTCCAAGGGTCTGCTATCGGGTATTACGGCTCTTTTGAAAATGATACGGTGAATTTTTCGG
AAGATTCCGCTCCTGGTACGGATTATCTTGCGTCGTTATGTGTTGATTGGGAAACCGCCTCGGAACCGCTTGCAAAACTT
GGAATAAGGTTGGTTCGAATTAGAACCGGCGTTGTTTTAAGTCTTTACGGAGGAGCGCTGGGAAGTATGCTTTCTCCTTT
TCGATTGGGTTTGGGAGGGCCGATAGGTTCCGGAAGACAAGTCTTTAGTTGGATTCATATCGAAGACATGGTCGGCGCGA
TTGTTTACTTATTAGAAAATTCTAATCTTTCAGGAGCGTTCAATTTGGTGGCTCCAAATCCGGTAAATAACGAGGTCTTT
TCGAAAACGCTTGCACATATATTAAAACGCCCCGCATTTTTTGGGGTTCCGGCGACGATCTTAAAAGTCCTTTATCAAGA
CGGCGCGGACGTGATCTTAAAAGGTCAGAAAGTGATACCGAAGAGATTGCAAAAATCCGGATTTTCTTTTTTATACCCAA
AACTTGACACGGCATTGCAAAACCTCTTGATTTCAAGTTCCTAG

Upstream 100 bases:

>100_bases
TGGGGAATCATAGGATCAAAAATGTGAAAACTTGCATTTTAGGACAATCAGGATTCTGGTTTTTTGAATCTTTCAAACAA
AAATAAAAAGGTGATCAATG

Downstream 100 bases:

>100_bases
TTTTCTAAAGGGCGCCTCTATAAAATCCAAAGATGCAGGTTCTAAAATCAACTTTCTAGATGGAATCACCGTTTTCGAAG
TGATCGTCAAATGAGATGGA

Product: nucleoside-diphosphate sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNIGIAGGTGLIGRTLALRLLKTGNFVRIFSRSSDIPGFFRDRKNLEIVGGGGDPRPEHLEGLDGIVNLAGAPIVGVRWT
KKMKEEIRSSRVNYTENLVSSVSKIVGTPPKVFVQGSAIGYYGSFENDTVNFSEDSAPGTDYLASLCVDWETASEPLAKL
GIRLVRIRTGVVLSLYGGALGSMLSPFRLGLGGPIGSGRQVFSWIHIEDMVGAIVYLLENSNLSGAFNLVAPNPVNNEVF
SKTLAHILKRPAFFGVPATILKVLYQDGADVILKGQKVIPKRLQKSGFSFLYPKLDTALQNLLISSS

Sequences:

>Translated_307_residues
MNIGIAGGTGLIGRTLALRLLKTGNFVRIFSRSSDIPGFFRDRKNLEIVGGGGDPRPEHLEGLDGIVNLAGAPIVGVRWT
KKMKEEIRSSRVNYTENLVSSVSKIVGTPPKVFVQGSAIGYYGSFENDTVNFSEDSAPGTDYLASLCVDWETASEPLAKL
GIRLVRIRTGVVLSLYGGALGSMLSPFRLGLGGPIGSGRQVFSWIHIEDMVGAIVYLLENSNLSGAFNLVAPNPVNNEVF
SKTLAHILKRPAFFGVPATILKVLYQDGADVILKGQKVIPKRLQKSGFSFLYPKLDTALQNLLISSS
>Mature_307_residues
MNIGIAGGTGLIGRTLALRLLKTGNFVRIFSRSSDIPGFFRDRKNLEIVGGGGDPRPEHLEGLDGIVNLAGAPIVGVRWT
KKMKEEIRSSRVNYTENLVSSVSKIVGTPPKVFVQGSAIGYYGSFENDTVNFSEDSAPGTDYLASLCVDWETASEPLAKL
GIRLVRIRTGVVLSLYGGALGSMLSPFRLGLGGPIGSGRQVFSWIHIEDMVGAIVYLLENSNLSGAFNLVAPNPVNNEVF
SKTLAHILKRPAFFGVPATILKVLYQDGADVILKGQKVIPKRLQKSGFSFLYPKLDTALQNLLISSS

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=307, Percent_Identity=37.4592833876222, Blast_Score=181, Evalue=9e-46,
Organism=Escherichia coli, GI1788642, Length=303, Percent_Identity=43.5643564356436, Blast_Score=243, Evalue=8e-66,
Organism=Drosophila melanogaster, GI28573846, Length=306, Percent_Identity=33.9869281045752, Blast_Score=165, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33069; Mature: 33069

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGIAGGTGLIGRTLALRLLKTGNFVRIFSRSSDIPGFFRDRKNLEIVGGGGDPRPEHL
CCEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCCCCHHHH
EGLDGIVNLAGAPIVGVRWTKKMKEEIRSSRVNYTENLVSSVSKIVGTPPKVFVQGSAIG
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCEEE
YYGSFENDTVNFSEDSAPGTDYLASLCVDWETASEPLAKLGIRLVRIRTGVVLSLYGGAL
ECCCCCCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCEEEEHHHHHH
GSMLSPFRLGLGGPIGSGRQVFSWIHIEDMVGAIVYLLENSNLSGAFNLVAPNPVNNEVF
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHHH
SKTLAHILKRPAFFGVPATILKVLYQDGADVILKGQKVIPKRLQKSGFSFLYPKLDTALQ
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEECHHHHHHHH
NLLISSS
HHHHCCC
>Mature Secondary Structure
MNIGIAGGTGLIGRTLALRLLKTGNFVRIFSRSSDIPGFFRDRKNLEIVGGGGDPRPEHL
CCEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEEEEECCCCCCHHHH
EGLDGIVNLAGAPIVGVRWTKKMKEEIRSSRVNYTENLVSSVSKIVGTPPKVFVQGSAIG
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCEEE
YYGSFENDTVNFSEDSAPGTDYLASLCVDWETASEPLAKLGIRLVRIRTGVVLSLYGGAL
ECCCCCCCEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCEEEEEECCEEEEHHHHHH
GSMLSPFRLGLGGPIGSGRQVFSWIHIEDMVGAIVYLLENSNLSGAFNLVAPNPVNNEVF
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHHH
SKTLAHILKRPAFFGVPATILKVLYQDGADVILKGQKVIPKRLQKSGFSFLYPKLDTALQ
HHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEECHHHHHHHH
NLLISSS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]