Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
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Accession | NC_008378 |
Length | 870,021 |
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The map label for this gene is 116249209
Identifier: 116249209
GI number: 116249209
Start: 593215
End: 593685
Strand: Reverse
Name: 116249209
Synonym: pRL120545
Alternate gene names: NA
Gene position: 593685-593215 (Counterclockwise)
Preceding gene: 116249210
Following gene: 116249207
Centisome position: 68.24
GC content: 61.36
Gene sequence:
>471_bases ATGTCGATGACATCCAAGTTCATGAGCCGTCGCGCGGTGCTGGGCGGAACCTTGGCGGCCGCCGCTCTCCCTCTCGTGGC GCAAGGGCAGGACGAGCGCGGCCCGGCAAGTCCCGAGGCTACAGGCGTCAGGATCAGGATAGGCTTCAACAATCTAACCC TGACCGCGACACTCTCCAACAATCCGACGGCGCGCGATCTCGTTTCCATCCTGCCCCTGAACCTTAAGATCGAGGACTAC GGCAGGAACGAAAAGATCGTCCATCTGCCGCGCAAGCTGACCGAAGAAGGCAGCGGTGCTTTCGGAAACGAGCAGCCGGG CGACCTTTGCTACTTCAAACCGTGGGGTAATCTGGCCCTGTTCCATGCGGATTATCGCTGGGACGGGCTGATCCGGCTCG GCCGCTTCGACGATGGCTTCGAGCCGTTGCTGGTGCGCGGCGAGTATCCGGTCCGCATAGAACGCATATGA
Upstream 100 bases:
>100_bases GCCCGAACGGTCGCCTTCGCGGTGAACGAACCAGACGATGTCGACATCAACGAAATCCTGTTCCGGCCGACGGCTCAACC TGTCTGACGGAAGGCGCGCC
Downstream 100 bases:
>100_bases CAAGGGCCTTATGGCCGGAGATAGCAATTCGCCTTCCGCCCAAGCATGAAAGAACCCCATAGACGATACTTCCAGAACCA GAAAGCCGCGGCCGGCTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MSMTSKFMSRRAVLGGTLAAAALPLVAQGQDERGPASPEATGVRIRIGFNNLTLTATLSNNPTARDLVSILPLNLKIEDY GRNEKIVHLPRKLTEEGSGAFGNEQPGDLCYFKPWGNLALFHADYRWDGLIRLGRFDDGFEPLLVRGEYPVRIERI
Sequences:
>Translated_156_residues MSMTSKFMSRRAVLGGTLAAAALPLVAQGQDERGPASPEATGVRIRIGFNNLTLTATLSNNPTARDLVSILPLNLKIEDY GRNEKIVHLPRKLTEEGSGAFGNEQPGDLCYFKPWGNLALFHADYRWDGLIRLGRFDDGFEPLLVRGEYPVRIERI >Mature_155_residues SMTSKFMSRRAVLGGTLAAAALPLVAQGQDERGPASPEATGVRIRIGFNNLTLTATLSNNPTARDLVSILPLNLKIEDYG RNEKIVHLPRKLTEEGSGAFGNEQPGDLCYFKPWGNLALFHADYRWDGLIRLGRFDDGFEPLLVRGEYPVRIERI
Specific function: Unknown
COG id: COG4925
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17270; Mature: 17139
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMTSKFMSRRAVLGGTLAAAALPLVAQGQDERGPASPEATGVRIRIGFNNLTLTATLSN CCHHHHHHHHHHHHCCHHHHHHCCCEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEECC NPTARDLVSILPLNLKIEDYGRNEKIVHLPRKLTEEGSGAFGNEQPGDLCYFKPWGNLAL CCCHHHHHHHCCCEEEEECCCCCCEEEECCHHHCCCCCCCCCCCCCCCEEEECCCCCEEE FHADYRWDGLIRLGRFDDGFEPLLVRGEYPVRIERI EEECCCCCCEEEECCCCCCCCEEEEECCCCEEEEEC >Mature Secondary Structure SMTSKFMSRRAVLGGTLAAAALPLVAQGQDERGPASPEATGVRIRIGFNNLTLTATLSN CHHHHHHHHHHHHCCHHHHHHCCCEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEECC NPTARDLVSILPLNLKIEDYGRNEKIVHLPRKLTEEGSGAFGNEQPGDLCYFKPWGNLAL CCCHHHHHHHCCCEEEEECCCCCCEEEECCHHHCCCCCCCCCCCCCCCEEEECCCCCEEE FHADYRWDGLIRLGRFDDGFEPLLVRGEYPVRIERI EEECCCCCCEEEECCCCCCCCEEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA