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The map label for this gene is yddU [C]

Identifier: 116249205

GI number: 116249205

Start: 587858

End: 589855

Strand: Reverse

Name: yddU [C]

Synonym: pRL120541

Alternate gene names: 116249205

Gene position: 589855-587858 (Counterclockwise)

Preceding gene: 116249207

Following gene: 116249204

Centisome position: 67.8

GC content: 56.51

Gene sequence:

>1998_bases
ATGGCTTACTTTTCAACATACTTTAGATGGCTGTCAGGCCAGCGTCGTTGCATGATCGCGGCTTGCACTAATGTCCAGAG
TGACGAATCTACCGCCAGCTTTTCATTCGCCGAGGCCCTCAAATCTCTGAAAACTGAAAATGATGCTGTCCGGAGGCGGA
GCTCACGGCAAGGTCTTTGGATGGCGGTTGCCGTTTATGTGGCCTTTGCACTTCCCGACCGATGGCTGATCCCCGATGTT
GCCCCTGTGACGATCGCCGCGCGATTCGCCGTTGCAACGATCGCGCTGTTGGCGTTCGAAATCCTGCGACTGGCAAATGC
GAAAACCGTTTGGCTCGACATCACATGCGCCGCAGCACTGCTCGTGGGCTATGTAGGCTGGCTTTATCCGGCGATTGCCA
CCCGCGACGTCACCGCCATGTCATACTACATGATATTCGGCGCCATCTTCATGATGGGCGCCAACCTGTTTTTCAGTTTC
CCGTTCCGGCTTTCGGTGATCACCTCGGGCCTCGTTCTATGCGCATTTTTCATTACGATCGTGGAATTTTTTCCTTCAAG
CCAAACCTACAAGCTTGCCTTCGGGATGTTCTACATTTCGTGCTTTACCTTCACGTCTTTCGTCAATTGGCGATTGAACG
TGGAGCGTCGAAACGTGTTGTTGAACGCGGCGGAGGCTCGCCACCAGCACTGGGAGGCGTCCGAGCGTGGAAGGTCACTG
CTCGAGCTTTCACATACTGACTACCTGACGGGCATAAGCAACAGGCGCGCCCTGGATCGGCGGCTAGACGAATGCTGGGC
CGCCTGGAAAGACGAACGCCGCGACTTCTCCGTGTTCCTCATCGATGTCGACTTTTTCAAGCGCTTCAATGATCGCTACG
GACATCAGGAAGGAGACCGATGTCTGACTGTCATCGCCAATGCGCTGAAGGCGGTTGTAGAGTCGTCCGATGGCATGATC
GGCAGGTATGGTGGCGAGGAGTTTATCGTGGTCATGCCGGCTGCCCTCCCCAAGGTCGCGATGACTCTCGCCGAGAAGAT
TAGAATGGAAGTCGAGTCTCTTGCGATTGCTCACGACGAGCGACCAGATGATATGTCGACCGTGACCGTCAGCATCGGTG
TCGCCTTCACCCGCGAGAAAGTTGGAGAGAAAGTTGAACGAATAGTCCGTGAAGCCGACCTCGCTCTCTACAATGCCAAA
GCAAGTGGCCGAAACTGCATTCGTAGTTTTGATCCGCTGTTGCCTCGCCCCGACGACCATGCTGGTAAGCTCGTCCCGCT
GCTGGCGGCCGCCATCGATCGCAAACTGGTCTCGCTCGTGTACCAACCGATCTTCGACGTGACGAACGGGAAAGCAAGAG
CTGTCGAGGCTTTGATGCGCCTCAGGATGCCGGACGGCACGGCGGTTTCGCCGAAGACATTCATTCCGGTTGCAGAACGA
AGTGGCGCTATCCTCGAACTGGGCAGATGGGCGATCGAGACGGCATGCCGTGATATACTGATGACCGATCGCATGGCGAC
CGTCAGCGTCAACGTGTCACCGATACAACTGCGTTCCCCCGGCTTTGCTGCCAGTGTCGCTGATATCCTTGCTCGGTGCG
GGGTCTGCGGGTCGCGACTGGCCTTGGAAGTCACCGAGGGCCTGGACATGGACATGCAGTCGGAGGTGCTTAAATGCATT
GCCGATCTGCGGGCACTCGGCGTCGAGATCTGGCTTGACGACTTCGGCTGCGGCTTCGCGGGCCTGTCGTGGCTGAGGGC
AATCGAGTTTCAGACGGTCAAGGTCGATAGAACCTTCCTCCACGACTGCTCGAACCCACGCGGTCTGATGATGCTTCAGG
ACATGATTGCTCTCATCCGCAATCGTGGGAATACGATCCTGGTGGAAGGCGTCGAAACTGCAGCACAGTTTTCCCTTCTC
AAGGATCTTCGCATCGACCGCGTCCAGGGCTTTCATATGGGAATGCCGGTTAGCGCTGAACTTCTGAGCGCGGCATAA

Upstream 100 bases:

>100_bases
ATTCTACTCTTGCGGGTCAGATGCTACCCCTCTAACAAAGCTAAGCAATAAGACAAACCGGTTGCAGATTGCCGAACGCG
ATTTTGGAGGGCGCCGAAGT

Downstream 100 bases:

>100_bases
CTCGCCTCAAGGTTTCCAGATGGCCCAGCGTTGCCGATGATCGGTGGCACATGACGTCTCTGCAAATCGCGAACCCGGAC
GCCACGGCCGCACGGCAAAG

Product: GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 665; Mature: 664

Protein sequence:

>665_residues
MAYFSTYFRWLSGQRRCMIAACTNVQSDESTASFSFAEALKSLKTENDAVRRRSSRQGLWMAVAVYVAFALPDRWLIPDV
APVTIAARFAVATIALLAFEILRLANAKTVWLDITCAAALLVGYVGWLYPAIATRDVTAMSYYMIFGAIFMMGANLFFSF
PFRLSVITSGLVLCAFFITIVEFFPSSQTYKLAFGMFYISCFTFTSFVNWRLNVERRNVLLNAAEARHQHWEASERGRSL
LELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRCLTVIANALKAVVESSDGMI
GRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDERPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAK
ASGRNCIRSFDPLLPRPDDHAGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAVSPKTFIPVAER
SGAILELGRWAIETACRDILMTDRMATVSVNVSPIQLRSPGFAASVADILARCGVCGSRLALEVTEGLDMDMQSEVLKCI
ADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFLHDCSNPRGLMMLQDMIALIRNRGNTILVEGVETAAQFSLL
KDLRIDRVQGFHMGMPVSAELLSAA

Sequences:

>Translated_665_residues
MAYFSTYFRWLSGQRRCMIAACTNVQSDESTASFSFAEALKSLKTENDAVRRRSSRQGLWMAVAVYVAFALPDRWLIPDV
APVTIAARFAVATIALLAFEILRLANAKTVWLDITCAAALLVGYVGWLYPAIATRDVTAMSYYMIFGAIFMMGANLFFSF
PFRLSVITSGLVLCAFFITIVEFFPSSQTYKLAFGMFYISCFTFTSFVNWRLNVERRNVLLNAAEARHQHWEASERGRSL
LELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRCLTVIANALKAVVESSDGMI
GRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDERPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAK
ASGRNCIRSFDPLLPRPDDHAGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAVSPKTFIPVAER
SGAILELGRWAIETACRDILMTDRMATVSVNVSPIQLRSPGFAASVADILARCGVCGSRLALEVTEGLDMDMQSEVLKCI
ADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFLHDCSNPRGLMMLQDMIALIRNRGNTILVEGVETAAQFSLL
KDLRIDRVQGFHMGMPVSAELLSAA
>Mature_664_residues
AYFSTYFRWLSGQRRCMIAACTNVQSDESTASFSFAEALKSLKTENDAVRRRSSRQGLWMAVAVYVAFALPDRWLIPDVA
PVTIAARFAVATIALLAFEILRLANAKTVWLDITCAAALLVGYVGWLYPAIATRDVTAMSYYMIFGAIFMMGANLFFSFP
FRLSVITSGLVLCAFFITIVEFFPSSQTYKLAFGMFYISCFTFTSFVNWRLNVERRNVLLNAAEARHQHWEASERGRSLL
ELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDRCLTVIANALKAVVESSDGMIG
RYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDERPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKA
SGRNCIRSFDPLLPRPDDHAGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAVSPKTFIPVAERS
GAILELGRWAIETACRDILMTDRMATVSVNVSPIQLRSPGFAASVADILARCGVCGSRLALEVTEGLDMDMQSEVLKCIA
DLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFLHDCSNPRGLMMLQDMIALIRNRGNTILVEGVETAAQFSLLK
DLRIDRVQGFHMGMPVSAELLSAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=30.0230946882217, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=28.9411764705882, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI226510982, Length=373, Percent_Identity=27.8820375335121, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081845, Length=237, Percent_Identity=29.535864978903, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=29.2887029288703, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788502, Length=238, Percent_Identity=28.9915966386555, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=35.8024691358025, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081743, Length=227, Percent_Identity=29.0748898678414, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=32.9545454545455, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787055, Length=229, Percent_Identity=31.8777292576419, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=34.5679012345679, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1786507, Length=274, Percent_Identity=26.6423357664234, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=34.7305389221557, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=35.9756097560976, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788849, Length=235, Percent_Identity=25.9574468085106, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87082096, Length=426, Percent_Identity=23.7089201877934, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=37.2670807453416, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=35.1851851851852, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081980, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=31.0975609756098, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=179, Percent_Identity=26.8156424581006, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=26.6304347826087, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=126, Percent_Identity=34.1269841269841, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74157; Mature: 74026

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYFSTYFRWLSGQRRCMIAACTNVQSDESTASFSFAEALKSLKTENDAVRRRSSRQGLW
CCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
MAVAVYVAFALPDRWLIPDVAPVTIAARFAVATIALLAFEILRLANAKTVWLDITCAAAL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
LVGYVGWLYPAIATRDVTAMSYYMIFGAIFMMGANLFFSFPFRLSVITSGLVLCAFFITI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHHHHH
VEFFPSSQTYKLAFGMFYISCFTFTSFVNWRLNVERRNVLLNAAEARHQHWEASERGRSL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHHHEEEHHHHHHHCCCHHHHCCHH
LELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDR
HHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCHH
CLTVIANALKAVVESSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDE
HHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
RPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFDPLLPRPDDH
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCCCCCC
AGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAVSPKTFIPVAER
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCC
SGAILELGRWAIETACRDILMTDRMATVSVNVSPIQLRSPGFAASVADILARCGVCGSRL
CCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCCHH
ALEVTEGLDMDMQSEVLKCIADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFL
EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHEEEEEHHHHH
HDCSNPRGLMMLQDMIALIRNRGNTILVEGVETAAQFSLLKDLRIDRVQGFHMGMPVSAE
HCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LLSAA
HHHCC
>Mature Secondary Structure 
AYFSTYFRWLSGQRRCMIAACTNVQSDESTASFSFAEALKSLKTENDAVRRRSSRQGLW
CHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
MAVAVYVAFALPDRWLIPDVAPVTIAARFAVATIALLAFEILRLANAKTVWLDITCAAAL
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
LVGYVGWLYPAIATRDVTAMSYYMIFGAIFMMGANLFFSFPFRLSVITSGLVLCAFFITI
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHEECCHHHHHHHHHHHHHHHHHHH
VEFFPSSQTYKLAFGMFYISCFTFTSFVNWRLNVERRNVLLNAAEARHQHWEASERGRSL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEHHHHEEEHHHHHHHCCCHHHHCCHH
LELSHTDYLTGISNRRALDRRLDECWAAWKDERRDFSVFLIDVDFFKRFNDRYGHQEGDR
HHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHCCCCCCHH
CLTVIANALKAVVESSDGMIGRYGGEEFIVVMPAALPKVAMTLAEKIRMEVESLAIAHDE
HHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCC
RPDDMSTVTVSIGVAFTREKVGEKVERIVREADLALYNAKASGRNCIRSFDPLLPRPDDH
CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHCCCCCCCCCCC
AGKLVPLLAAAIDRKLVSLVYQPIFDVTNGKARAVEALMRLRMPDGTAVSPKTFIPVAER
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCC
SGAILELGRWAIETACRDILMTDRMATVSVNVSPIQLRSPGFAASVADILARCGVCGSRL
CCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCCCHHHHHHHHHHCCCCCCHH
ALEVTEGLDMDMQSEVLKCIADLRALGVEIWLDDFGCGFAGLSWLRAIEFQTVKVDRTFL
EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHEEEEEHHHHH
HDCSNPRGLMMLQDMIALIRNRGNTILVEGVETAAQFSLLKDLRIDRVQGFHMGMPVSAE
HCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
LLSAA
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]