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The map label for this gene is ydfH [C]

Identifier: 116248909

GI number: 116248909

Start: 250349

End: 251068

Strand: Direct

Name: ydfH [C]

Synonym: pRL120239

Alternate gene names: 116248909

Gene position: 250349-251068 (Clockwise)

Preceding gene: 116248900

Following gene: 116248917

Centisome position: 28.78

GC content: 59.31

Gene sequence:

>720_bases
ATGAATTCCCAGTTCGCCTCTACATTCGGCCTGACCGCGCCCGGCTTTCCGGTTGTTGCCGGCAGTACGGTCCAGCGGGT
CTATGATGATCTGCGAAAGCGCATCATCACCATTCAGCTGCCGCCGGACACCACGCTGTCGCGCACCGAGCTCACCGAGA
CTTATGAAGTCAGCCAGACTCCCATCCGAGATGCATTGCAGCTTCTCAAACAGGAAGGTCTGGTTCGCATTTATCCGCAG
TCCCGCACTGTGGTGACCAGGATCGACGTCCTGCAGATTTACGAGGCACATTTCCTTCGCGTTGCCCTGGAAACGGAGGT
TTGCCGCCGCCTCGCAACCGATCCGGATCCGGATCCGAGCGTCATTACCCGCGCCCGGTCGATCATCAAGATGCAGGCGG
CTGTCGCCGACGACGCCGATCAGATCGCGATCTTCCAGGAGCTCGACGAGCTCTTTCACCAGACATTGTTCGCAGGCGCT
AAGCGCAGCAGCCTCCACCAATTGATACGCGAGCGGTCCGGCCATCTCGAGCGTATTCGTCGCCTGCATCTGCCCGAGAA
GGGCAAGATCGTCAGCATTCTCGATGGGCATCACGCCATCATCGATGCGATTGCCGAGCGCAACGAACAGGGTGCCGTCG
ATGCAATCCGTGAGCATCTCAGCCGCACCGTCGCAAAAGTGGAAGACCTGCGGAAGGAGTTCCCGGACTACTTCGTCTGA

Upstream 100 bases:

>100_bases
CAACTGATATTTTAGTTTGACATATATATCAATGGAAAGTTTGCGTTCTTGTGCATTAGGTCGTGCAAAGCTATGAATGG
AGTCGAAAAGGACGCCTCAC

Downstream 100 bases:

>100_bases
TCTGCCGCGCCGCGGGCTTTGCCGGAGTCAATTGACCGGCGTCAGCAGCGGCCTGCCTGCGAAGAAGGCGGCAAGGTTGT
CGACCGTCAACTGCGCCATC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MNSQFASTFGLTAPGFPVVAGSTVQRVYDDLRKRIITIQLPPDTTLSRTELTETYEVSQTPIRDALQLLKQEGLVRIYPQ
SRTVVTRIDVLQIYEAHFLRVALETEVCRRLATDPDPDPSVITRARSIIKMQAAVADDADQIAIFQELDELFHQTLFAGA
KRSSLHQLIRERSGHLERIRRLHLPEKGKIVSILDGHHAIIDAIAERNEQGAVDAIREHLSRTVAKVEDLRKEFPDYFV

Sequences:

>Translated_239_residues
MNSQFASTFGLTAPGFPVVAGSTVQRVYDDLRKRIITIQLPPDTTLSRTELTETYEVSQTPIRDALQLLKQEGLVRIYPQ
SRTVVTRIDVLQIYEAHFLRVALETEVCRRLATDPDPDPSVITRARSIIKMQAAVADDADQIAIFQELDELFHQTLFAGA
KRSSLHQLIRERSGHLERIRRLHLPEKGKIVSILDGHHAIIDAIAERNEQGAVDAIREHLSRTVAKVEDLRKEFPDYFV
>Mature_239_residues
MNSQFASTFGLTAPGFPVVAGSTVQRVYDDLRKRIITIQLPPDTTLSRTELTETYEVSQTPIRDALQLLKQEGLVRIYPQ
SRTVVTRIDVLQIYEAHFLRVALETEVCRRLATDPDPDPSVITRARSIIKMQAAVADDADQIAIFQELDELFHQTLFAGA
KRSSLHQLIRERSGHLERIRRLHLPEKGKIVSILDGHHAIIDAIAERNEQGAVDAIREHLSRTVAKVEDLRKEFPDYFV

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=218, Percent_Identity=28.8990825688073, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27101; Mature: 27101

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSQFASTFGLTAPGFPVVAGSTVQRVYDDLRKRIITIQLPPDTTLSRTELTETYEVSQT
CCCCCCHHCCCCCCCCCEECCHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHCCCC
PIRDALQLLKQEGLVRIYPQSRTVVTRIDVLQIYEAHFLRVALETEVCRRLATDPDPDPS
CHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VITRARSIIKMQAAVADDADQIAIFQELDELFHQTLFAGAKRSSLHQLIRERSGHLERIR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHH
RLHLPEKGKIVSILDGHHAIIDAIAERNEQGAVDAIREHLSRTVAKVEDLRKEFPDYFV
HHCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNSQFASTFGLTAPGFPVVAGSTVQRVYDDLRKRIITIQLPPDTTLSRTELTETYEVSQT
CCCCCCHHCCCCCCCCCEECCHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHCCCC
PIRDALQLLKQEGLVRIYPQSRTVVTRIDVLQIYEAHFLRVALETEVCRRLATDPDPDPS
CHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VITRARSIIKMQAAVADDADQIAIFQELDELFHQTLFAGAKRSSLHQLIRERSGHLERIR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHH
RLHLPEKGKIVSILDGHHAIIDAIAERNEQGAVDAIREHLSRTVAKVEDLRKEFPDYFV
HHCCCCCCCEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8277241; 1612449 [H]