Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
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Accession | NC_008358 |
Length | 3,705,021 |
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The map label for this gene is 114800539
Identifier: 114800539
GI number: 114800539
Start: 224341
End: 225540
Strand: Direct
Name: 114800539
Synonym: HNE_0234
Alternate gene names: NA
Gene position: 224341-225540 (Clockwise)
Preceding gene: 114797106
Following gene: 114799545
Centisome position: 6.06
GC content: 60.25
Gene sequence:
>1200_bases ATGAGCAAGATGGCCCAGGCGACAAGCCCCTCGGCACTTCAATATCTCGACAAGGCAATGGGCGGGCTGAAACAGCTCGG GCTGGTGCCGGACAGCTCAAAGAGCGGCGCGGCGCCGATTGTCGCGCTGCTGGAGCAAATCGCCGATCTTGAGCCGGAGA AGGTGGCAGCGATTGCCCGCACGCTGGATCAGGCGAGCCTGTTCAATGATGTGGTGCGCGAGCAGGTCGCGGGGATCACC GTCGGCGAGCGCTATGAAGGTATCACGACCGCCTTCAATTCGATCCGTGATGACGCCAAATCCCTTGTCGATCAGTATGC CGATGGCAAGATTTCGACGATGGAGCGCGCCTCGAATGTCTGGATGAAAATGACGCGGGGCGACATCGCCAGCCGCTTTG ACAAGATCAAGGATCTCTATCTCGAGGTTCAGGATGAGTCAGCCAATCAGATCGACCGGGAGCGGAAGATCCTGGAGGCC TATCTCGATTTCCGCGGTGCAATGAAGCAGTCCGAAGTGCTCGCACTGGAAGTGCTCAAGGCGGCTGAGGCGGAACTCGA CGCGGCCAAGGCACGCGTTGGGGAAGCCGTCTCGGCTCTTGGCGCCTATGCCGGAGAGGACCCTGCAGAGCGGGCGCGGC TGGAGCTGGCGCGGGACGAACAACTCCGCCTGCTGCAGGCCGAAGAGAAGCGGTATCAGGTTTCCAAGGACCTCTCCGAC AACATCACCATCGGCTACAATACGTCTGAAGTGATCATGGCGCGTCTCGTCCAGACGACAAATGCCAAGGAGCGCGTCTA TGCCCAGTCGGTCAGCTTTTTCTCGACCAACGAGATCGTGCTGACGGCGCTGACAGCAAGCTTCACCGGTATGCATGGTC TGCACGAGTCCACGCAGACGCTGGAAGCGATGAAGAAGGGTGTGGATCAGAGCCTGGAAGTGCTCGCCGACATTGGCGGG CAGGTTCAGGAGGCCGCCGTGCGGGCAGGTTATGGGCCAACTGTTTCTGCCGCATCGGTCAAGATGCTGGTGGAAAGTGT CGTCTCCTATCAGGAGCGTGCGCAGACGATCATCGCCGAAATGCGCAAGCTCTCGACTGAGAACTCCAAGGAAATCCGCG AAGCCGTGGAAGATGGCAAGCGCCGCCTGACCAAGCTGGTTGAGGAGGGCGCAACGCTCGCGCTGCTTCCCAAGCCGTGA
Upstream 100 bases:
>100_bases TAATCGATATTTGCCGTTTTTCGATAAATACTTGTTGCGAAGACGGGCTGCTTTGCTACCTTTCCGGCAAGTCCGCAGTT CCGCGGGAAATATCGGAGGC
Downstream 100 bases:
>100_bases CATCGCCCGGCGCGCCAACAGCTCATGCCAGCAACAAGCTCGACGACATCCTCCTTGCGATGGATATCGTCGACACGCTG CGCCACCGCGAGCAGCTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MSKMAQATSPSALQYLDKAMGGLKQLGLVPDSSKSGAAPIVALLEQIADLEPEKVAAIARTLDQASLFNDVVREQVAGIT VGERYEGITTAFNSIRDDAKSLVDQYADGKISTMERASNVWMKMTRGDIASRFDKIKDLYLEVQDESANQIDRERKILEA YLDFRGAMKQSEVLALEVLKAAEAELDAAKARVGEAVSALGAYAGEDPAERARLELARDEQLRLLQAEEKRYQVSKDLSD NITIGYNTSEVIMARLVQTTNAKERVYAQSVSFFSTNEIVLTALTASFTGMHGLHESTQTLEAMKKGVDQSLEVLADIGG QVQEAAVRAGYGPTVSAASVKMLVESVVSYQERAQTIIAEMRKLSTENSKEIREAVEDGKRRLTKLVEEGATLALLPKP
Sequences:
>Translated_399_residues MSKMAQATSPSALQYLDKAMGGLKQLGLVPDSSKSGAAPIVALLEQIADLEPEKVAAIARTLDQASLFNDVVREQVAGIT VGERYEGITTAFNSIRDDAKSLVDQYADGKISTMERASNVWMKMTRGDIASRFDKIKDLYLEVQDESANQIDRERKILEA YLDFRGAMKQSEVLALEVLKAAEAELDAAKARVGEAVSALGAYAGEDPAERARLELARDEQLRLLQAEEKRYQVSKDLSD NITIGYNTSEVIMARLVQTTNAKERVYAQSVSFFSTNEIVLTALTASFTGMHGLHESTQTLEAMKKGVDQSLEVLADIGG QVQEAAVRAGYGPTVSAASVKMLVESVVSYQERAQTIIAEMRKLSTENSKEIREAVEDGKRRLTKLVEEGATLALLPKP >Mature_398_residues SKMAQATSPSALQYLDKAMGGLKQLGLVPDSSKSGAAPIVALLEQIADLEPEKVAAIARTLDQASLFNDVVREQVAGITV GERYEGITTAFNSIRDDAKSLVDQYADGKISTMERASNVWMKMTRGDIASRFDKIKDLYLEVQDESANQIDRERKILEAY LDFRGAMKQSEVLALEVLKAAEAELDAAKARVGEAVSALGAYAGEDPAERARLELARDEQLRLLQAEEKRYQVSKDLSDN ITIGYNTSEVIMARLVQTTNAKERVYAQSVSFFSTNEIVLTALTASFTGMHGLHESTQTLEAMKKGVDQSLEVLADIGGQ VQEAAVRAGYGPTVSAASVKMLVESVVSYQERAQTIIAEMRKLSTENSKEIREAVEDGKRRLTKLVEEGATLALLPKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43545; Mature: 43414
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKMAQATSPSALQYLDKAMGGLKQLGLVPDSSKSGAAPIVALLEQIADLEPEKVAAIAR CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH TLDQASLFNDVVREQVAGITVGERYEGITTAFNSIRDDAKSLVDQYADGKISTMERASNV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH WMKMTRGDIASRFDKIKDLYLEVQDESANQIDRERKILEAYLDFRGAMKQSEVLALEVLK HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAEAELDAAKARVGEAVSALGAYAGEDPAERARLELARDEQLRLLQAEEKRYQVSKDLSD HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NITIGYNTSEVIMARLVQTTNAKERVYAQSVSFFSTNEIVLTALTASFTGMHGLHESTQT CEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LEAMKKGVDQSLEVLADIGGQVQEAAVRAGYGPTVSAASVKMLVESVVSYQERAQTIIAE HHHHHHCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MRKLSTENSKEIREAVEDGKRRLTKLVEEGATLALLPKP HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC >Mature Secondary Structure SKMAQATSPSALQYLDKAMGGLKQLGLVPDSSKSGAAPIVALLEQIADLEPEKVAAIAR CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH TLDQASLFNDVVREQVAGITVGERYEGITTAFNSIRDDAKSLVDQYADGKISTMERASNV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH WMKMTRGDIASRFDKIKDLYLEVQDESANQIDRERKILEAYLDFRGAMKQSEVLALEVLK HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAEAELDAAKARVGEAVSALGAYAGEDPAERARLELARDEQLRLLQAEEKRYQVSKDLSD HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NITIGYNTSEVIMARLVQTTNAKERVYAQSVSFFSTNEIVLTALTASFTGMHGLHESTQT CEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH LEAMKKGVDQSLEVLADIGGQVQEAAVRAGYGPTVSAASVKMLVESVVSYQERAQTIIAE HHHHHHCHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MRKLSTENSKEIREAVEDGKRRLTKLVEEGATLALLPKP HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA