| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is pupA [H]
Identifier: 114800361
GI number: 114800361
Start: 2211196
End: 2213763
Strand: Direct
Name: pupA [H]
Synonym: HNE_2128
Alternate gene names: 114800361
Gene position: 2211196-2213763 (Clockwise)
Preceding gene: 114797887
Following gene: 114797787
Centisome position: 59.68
GC content: 60.51
Gene sequence:
>2568_bases ATGAAAAGACCATCCTTGTGGGCAGCCGCTAGCGCGCTGGCCATTGTTGCCACTGGCCAGGCCATTGCCCAGGAAGACAC CGAATCGACAGAGGTGAAACGCCTCGAACAGGTGACCGTGACCGCCGTAAAGCGCGAGCAGAGCCTGAATGATGTTCCCG TCTCCGTGACGGCCTTCACCGAAGACATGCGCCAGGACCTCGCGCTCGACAGCCTGTCGGACTTTGCGCGCTTCACGCCC AGCCTCGCTTTCTCTGCGGGCGACGACCGCGTGTTCATCCGCGGCATCGGCCGCCAGACCAACACCAACGGCTCCGATCC CGGCGTGGCAACCTATGCCGATGGCATTTATGATTCCTCCACCAGCGCCGTCAGCAAGAGCGACTTCTTCGTCGAGCGCG TTGAAGTTCTGCGCGGCCCGCAAGGCACGCTGTATGGCCGCAACTCCATTGGCGGCGCGATCAACGTCATCTCCAAACGC CCGACCGATACGTTCACCGGCGAGGCGCGCGTAGGCATTGCCAACTATCAGACCTCGGAAGTTGAAGCCGCCATCTCCGG CCCGATTGCCAAAAATATCCGTGCCAAGCTTGGCGGCTCGTTCCGCAATCAGGAAGATGGCTATTACAAGAACGTTGCGG GCGGCCCCAGCGAGGGCGGCGCGAACGAAACGACCTACGCCGAATTCCAGTTGGACATGGACCCGGCGGAGAACTTCAAT CTCTGGCTCAAGGCAGATTATCTGGACGCGGACCTGCGCAACCGCAGCACAAACCTTGCCTCGCCCTATGATCCCTTCCC CTTCCCGCCCGGCTATCTGACACCTGGAAACGCCTTCGGATACCTGATGCCTGGCTTTACGCAGACAGGGTCTACAACCA CCAACCCCGGCGCTACGGACATCCGCAAGTTCAACGCCAACACGCCGACAGAATCCACCGTAGACGGCAATTATGGCTTC GCCGCCATTGCCACCTGGAGCCTGCCGACTGTCGACATCAAATACAGCGGCGGCTACCGGATCTTCGACTATGTCTCCAA CCGCGATGACGACAATACGGATATGTTGTCGTATTCCTATCCGCTTGATTCGGCGAATATTGCGGCGGGCGAAGTGTTCA CCGGCGGGCCAAACTGCGCCTGGCTTCTGGAGAACCTCGGCCCGGTCTGCGCTGCGGCCACCGTCAATCCTGCCCGCACC TTCGGCTATATCGAAGACCGCTCCTATTCCAGCCATGAGCTGACTGTTCAGTCCACGACCGATTCAGATCTCTGGTGGAT CGCAGGCGCCTATGCCTATTACGAAGACGCGCATCAGGAGTCGCATTTCGGCAACGCAGCCCAGCCGGAAATGCTGGCCC CTGTGGGTGGCCCTGCCAATCCCAGCGGGGATTATGTAACGGCAATTTCAGACCTCAACACCAAATCTTATGCCGTCTTC GGACAGGCCGATTATGCGGTTACGGATACGGTGACCCTTACAGGTGGCCTGCGCTATTCGAAGGACGAGAAGTACGGCTC GGAACAGCTGCGCGTTCTCGGCTATGGCATCGTGCCCGGCTTCACGCTGGGTGGTTCGGGCAATCTCGCGCCCGTGCTCG ACCTGACGGCAGCCACCGCGTCCTACACCGACGCCGAGGGTGTCGACAGCCCGGTCGTGATTGATCCGGTAACGGGCCTT GCCAGCCGCCGCCTTGCGCATGACTGGAGCGCCCTGTCCGGCGTTGCAGGCATCCAGTGGCAACCGGATGCGGCGACGAA CTACTTCGCGCGCTACAGCCGTGGCTACAAATCCGGCGGTTTCAATGCTGGCGGCATCAGCCAGTTCCCGCTGACCGACA AGGAGCTTCTGGACGCCTTCGAAGTGGGCGCGAAGAAATCCATCGGCGACCAGCTGCAACTCAACGCAACCTATTTCTAC TATGCCTATGACGGCCTTCAGGCCCCGCTGGATGTGGTGGAAAACGGTGTGCGGCTCACGCGCTTCTTCAACATCGAGGA TTCACGCGCGCAAGGCATTGAACTGGAAGCGCTGTGGACGCCTACGGATCAACTCCGCATCATGGCGAGCTATGCCTATA ACGACTCCGAGATACGCAATGCCTGCTGCTTCATCGACGTTGTGGACCCGCTTGGCCTGCAACCCGGCGCCCAGCCCGTT GGCCCGATCGATGCCAACGGCAACCAGCCGCAGAACCTGAAAGGCCAGACATTGCCCCGCACGGTGCCTCACAAGCTGGG CCTCAATGCCAGCTATGACATTCCGCTGGGCTCGATTGGCGACCTGACGGTTTCGGGCAACTATTCCTGGCAGGACGCAA CCTATCACGGCGTCTTCAACCGGTCGTACACGGAAACCCCGGCGTTCGATCAGGTTGACCTCATCGGTGTCTGGAAAAGC CCGCAGGATCGTTACCGTGTGGTCGGCTACGTCAAGAACGTGTTCGATGAGCAGGGCTATGACGGGGCAACCGGCACGCA GACGGCCATTCCGGCTGGCGGCTTTGCCAATACGCTCTACCTGACCCCGCCGCGCACCTATGGCGTTCAGTTGCAGATGA GCTTCTGA
Upstream 100 bases:
>100_bases ATCAAGATAACACTATGCAAGTAGATTAATCGATAATATCCTGCCGAAAATCATCTAGCATATGGCTGACTCATAAAAGA TGATTGGGAGGAATATTGCG
Downstream 100 bases:
>100_bases TCCACAGGGCATGGAACACGCCGTGACCCGCAAGGCAGGAAAATTACCCTGGGCGACGAAGCTCATCTACGGGGTTGGAA CCATCGCGTTCGGTATCAAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 855; Mature: 855
Protein sequence:
>855_residues MKRPSLWAAASALAIVATGQAIAQEDTESTEVKRLEQVTVTAVKREQSLNDVPVSVTAFTEDMRQDLALDSLSDFARFTP SLAFSAGDDRVFIRGIGRQTNTNGSDPGVATYADGIYDSSTSAVSKSDFFVERVEVLRGPQGTLYGRNSIGGAINVISKR PTDTFTGEARVGIANYQTSEVEAAISGPIAKNIRAKLGGSFRNQEDGYYKNVAGGPSEGGANETTYAEFQLDMDPAENFN LWLKADYLDADLRNRSTNLASPYDPFPFPPGYLTPGNAFGYLMPGFTQTGSTTTNPGATDIRKFNANTPTESTVDGNYGF AAIATWSLPTVDIKYSGGYRIFDYVSNRDDDNTDMLSYSYPLDSANIAAGEVFTGGPNCAWLLENLGPVCAAATVNPART FGYIEDRSYSSHELTVQSTTDSDLWWIAGAYAYYEDAHQESHFGNAAQPEMLAPVGGPANPSGDYVTAISDLNTKSYAVF GQADYAVTDTVTLTGGLRYSKDEKYGSEQLRVLGYGIVPGFTLGGSGNLAPVLDLTAATASYTDAEGVDSPVVIDPVTGL ASRRLAHDWSALSGVAGIQWQPDAATNYFARYSRGYKSGGFNAGGISQFPLTDKELLDAFEVGAKKSIGDQLQLNATYFY YAYDGLQAPLDVVENGVRLTRFFNIEDSRAQGIELEALWTPTDQLRIMASYAYNDSEIRNACCFIDVVDPLGLQPGAQPV GPIDANGNQPQNLKGQTLPRTVPHKLGLNASYDIPLGSIGDLTVSGNYSWQDATYHGVFNRSYTETPAFDQVDLIGVWKS PQDRYRVVGYVKNVFDEQGYDGATGTQTAIPAGGFANTLYLTPPRTYGVQLQMSF
Sequences:
>Translated_855_residues MKRPSLWAAASALAIVATGQAIAQEDTESTEVKRLEQVTVTAVKREQSLNDVPVSVTAFTEDMRQDLALDSLSDFARFTP SLAFSAGDDRVFIRGIGRQTNTNGSDPGVATYADGIYDSSTSAVSKSDFFVERVEVLRGPQGTLYGRNSIGGAINVISKR PTDTFTGEARVGIANYQTSEVEAAISGPIAKNIRAKLGGSFRNQEDGYYKNVAGGPSEGGANETTYAEFQLDMDPAENFN LWLKADYLDADLRNRSTNLASPYDPFPFPPGYLTPGNAFGYLMPGFTQTGSTTTNPGATDIRKFNANTPTESTVDGNYGF AAIATWSLPTVDIKYSGGYRIFDYVSNRDDDNTDMLSYSYPLDSANIAAGEVFTGGPNCAWLLENLGPVCAAATVNPART FGYIEDRSYSSHELTVQSTTDSDLWWIAGAYAYYEDAHQESHFGNAAQPEMLAPVGGPANPSGDYVTAISDLNTKSYAVF GQADYAVTDTVTLTGGLRYSKDEKYGSEQLRVLGYGIVPGFTLGGSGNLAPVLDLTAATASYTDAEGVDSPVVIDPVTGL ASRRLAHDWSALSGVAGIQWQPDAATNYFARYSRGYKSGGFNAGGISQFPLTDKELLDAFEVGAKKSIGDQLQLNATYFY YAYDGLQAPLDVVENGVRLTRFFNIEDSRAQGIELEALWTPTDQLRIMASYAYNDSEIRNACCFIDVVDPLGLQPGAQPV GPIDANGNQPQNLKGQTLPRTVPHKLGLNASYDIPLGSIGDLTVSGNYSWQDATYHGVFNRSYTETPAFDQVDLIGVWKS PQDRYRVVGYVKNVFDEQGYDGATGTQTAIPAGGFANTLYLTPPRTYGVQLQMSF >Mature_855_residues MKRPSLWAAASALAIVATGQAIAQEDTESTEVKRLEQVTVTAVKREQSLNDVPVSVTAFTEDMRQDLALDSLSDFARFTP SLAFSAGDDRVFIRGIGRQTNTNGSDPGVATYADGIYDSSTSAVSKSDFFVERVEVLRGPQGTLYGRNSIGGAINVISKR PTDTFTGEARVGIANYQTSEVEAAISGPIAKNIRAKLGGSFRNQEDGYYKNVAGGPSEGGANETTYAEFQLDMDPAENFN LWLKADYLDADLRNRSTNLASPYDPFPFPPGYLTPGNAFGYLMPGFTQTGSTTTNPGATDIRKFNANTPTESTVDGNYGF AAIATWSLPTVDIKYSGGYRIFDYVSNRDDDNTDMLSYSYPLDSANIAAGEVFTGGPNCAWLLENLGPVCAAATVNPART FGYIEDRSYSSHELTVQSTTDSDLWWIAGAYAYYEDAHQESHFGNAAQPEMLAPVGGPANPSGDYVTAISDLNTKSYAVF GQADYAVTDTVTLTGGLRYSKDEKYGSEQLRVLGYGIVPGFTLGGSGNLAPVLDLTAATASYTDAEGVDSPVVIDPVTGL ASRRLAHDWSALSGVAGIQWQPDAATNYFARYSRGYKSGGFNAGGISQFPLTDKELLDAFEVGAKKSIGDQLQLNATYFY YAYDGLQAPLDVVENGVRLTRFFNIEDSRAQGIELEALWTPTDQLRIMASYAYNDSEIRNACCFIDVVDPLGLQPGAQPV GPIDANGNQPQNLKGQTLPRTVPHKLGLNASYDIPLGSIGDLTVSGNYSWQDATYHGVFNRSYTETPAFDQVDLIGVWKS PQDRYRVVGYVKNVFDEQGYDGATGTQTAIPAGGFANTLYLTPPRTYGVQLQMSF
Specific function: Specific receptor for the siderophore ferric pseudobactin 358 [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=148, Percent_Identity=30.4054054054054, Blast_Score=68, Evalue=3e-12, Organism=Escherichia coli, GI1787024, Length=170, Percent_Identity=30.5882352941176, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 92202; Mature: 92202
Theoretical pI: Translated: 4.28; Mature: 4.28
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRPSLWAAASALAIVATGQAIAQEDTESTEVKRLEQVTVTAVKREQSLNDVPVSVTAFT CCCCCHHHHHHEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHH EDMRQDLALDSLSDFARFTPSLAFSAGDDRVFIRGIGRQTNTNGSDPGVATYADGIYDSS HHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCC TSAVSKSDFFVERVEVLRGPQGTLYGRNSIGGAINVISKRPTDTFTGEARVGIANYQTSE CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCH VEAAISGPIAKNIRAKLGGSFRNQEDGYYKNVAGGPSEGGANETTYAEFQLDMDPAENFN HHHHHCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCE LWLKADYLDADLRNRSTNLASPYDPFPFPPGYLTPGNAFGYLMPGFTQTGSTTTNPGATD EEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCH IRKFNANTPTESTVDGNYGFAAIATWSLPTVDIKYSGGYRIFDYVSNRDDDNTDMLSYSY HEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEC PLDSANIAAGEVFTGGPNCAWLLENLGPVCAAATVNPARTFGYIEDRSYSSHELTVQSTT CCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEEECCHHHHCCEEECCCCCCCEEEEEECC DSDLWWIAGAYAYYEDAHQESHFGNAAQPEMLAPVGGPANPSGDYVTAISDLNTKSYAVF CCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCCEEEEE GQADYAVTDTVTLTGGLRYSKDEKYGSEQLRVLGYGIVPGFTLGGSGNLAPVLDLTAATA ECCCEEEEEEEEEECCEEECCCCCCCCCEEEEEEEECCCCEEECCCCCCCCEEEEHHHCC SYTDAEGVDSPVVIDPVTGLASRRLAHDWSALSGVAGIQWQPDAATNYFARYSRGYKSGG CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCC FNAGGISQFPLTDKELLDAFEVGAKKSIGDQLQLNATYFYYAYDGLQAPLDVVENGVRLT CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHCCEEEE RFFNIEDSRAQGIELEALWTPTDQLRIMASYAYNDSEIRNACCFIDVVDPLGLQPGAQPV EEECCCCCCCCCEEEEEEECCCHHEEEEEEECCCCHHHCCEEEEEEECCCCCCCCCCCCC GPIDANGNQPQNLKGQTLPRTVPHKLGLNASYDIPLGSIGDLTVSGNYSWQDATYHGVFN CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEC RSYTETPAFDQVDLIGVWKSPQDRYRVVGYVKNVFDEQGYDGATGTQTAIPAGGFANTLY CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE LTPPRTYGVQLQMSF ECCCCCEEEEEEEEC >Mature Secondary Structure MKRPSLWAAASALAIVATGQAIAQEDTESTEVKRLEQVTVTAVKREQSLNDVPVSVTAFT CCCCCHHHHHHEEEEEECCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHH EDMRQDLALDSLSDFARFTPSLAFSAGDDRVFIRGIGRQTNTNGSDPGVATYADGIYDSS HHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCC TSAVSKSDFFVERVEVLRGPQGTLYGRNSIGGAINVISKRPTDTFTGEARVGIANYQTSE CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCH VEAAISGPIAKNIRAKLGGSFRNQEDGYYKNVAGGPSEGGANETTYAEFQLDMDPAENFN HHHHHCCCHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCE LWLKADYLDADLRNRSTNLASPYDPFPFPPGYLTPGNAFGYLMPGFTQTGSTTTNPGATD EEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCH IRKFNANTPTESTVDGNYGFAAIATWSLPTVDIKYSGGYRIFDYVSNRDDDNTDMLSYSY HEEECCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEC PLDSANIAAGEVFTGGPNCAWLLENLGPVCAAATVNPARTFGYIEDRSYSSHELTVQSTT CCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEEECCHHHHCCEEECCCCCCCEEEEEECC DSDLWWIAGAYAYYEDAHQESHFGNAAQPEMLAPVGGPANPSGDYVTAISDLNTKSYAVF CCCEEEEEEHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCEEEEEECCCCCEEEEE GQADYAVTDTVTLTGGLRYSKDEKYGSEQLRVLGYGIVPGFTLGGSGNLAPVLDLTAATA ECCCEEEEEEEEEECCEEECCCCCCCCCEEEEEEEECCCCEEECCCCCCCCEEEEHHHCC SYTDAEGVDSPVVIDPVTGLASRRLAHDWSALSGVAGIQWQPDAATNYFARYSRGYKSGG CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHCCCCCCC FNAGGISQFPLTDKELLDAFEVGAKKSIGDQLQLNATYFYYAYDGLQAPLDVVENGVRLT CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEECCCCCCHHHHHCCEEEE RFFNIEDSRAQGIELEALWTPTDQLRIMASYAYNDSEIRNACCFIDVVDPLGLQPGAQPV EEECCCCCCCCCEEEEEEECCCHHEEEEEEECCCCHHHCCEEEEEEECCCCCCCCCCCCC GPIDANGNQPQNLKGQTLPRTVPHKLGLNASYDIPLGSIGDLTVSGNYSWQDATYHGVFN CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEC RSYTETPAFDQVDLIGVWKSPQDRYRVVGYVKNVFDEQGYDGATGTQTAIPAGGFANTLY CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE LTPPRTYGVQLQMSF ECCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1646376 [H]