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The map label for this gene is exoD [H]

Identifier: 114800206

GI number: 114800206

Start: 3373637

End: 3374257

Strand: Reverse

Name: exoD [H]

Synonym: HNE_3199

Alternate gene names: 114800206

Gene position: 3374257-3373637 (Counterclockwise)

Preceding gene: 114797483

Following gene: 114799469

Centisome position: 91.07

GC content: 61.67

Gene sequence:

>621_bases
ATGAACCGCAATGGCACCAATGTCCCCGTCACCAACCTGCGTACCATGATGCGCTCGCTCGTCCTCAACACGGAAGGCGA
GGACGTTACGGTCAGCGAGCTGCTGCAGGCCATTGGCCGGCGCGCCCATGGCCCGGTCTTCCTGCTTCTGGGATTTCTGG
CCGTCAGCCCCCTGACGATCATTCCCGGCGCGAACTGGTTTATCGCAACCGTGATCCTGGTTTTCGCCCTGCAGATCGTG
ATTGGCTTTCGCCATCCCTGGCTTCCCAAAGGCGTTACGGAATTCAAGTTCAAGCGCGCGCATCTCGTTCAGGGGATCGC
TGGGGGCGAGCGCTACGCGCATATGGTCGATGCGCTGGTTAAGCCCCGCCTGACATTTCTGACCGAGCCTCCGTTTATTC
AGGTCGTTGCGCTTGTCTGTGTGCTGGCGGCCCTGATCACCTATCCGCTGGGGCTCGTGCCTTTCGGCCCGTTGCTGCCC
AGCCTGACTGTTTTGCTGTTCGGCCTCGCGCTGACGGCGCGGGACGGCTTTGTGCTTTTGCTGGCGGGATGCGCCTTTGG
CGGCGCGGTTTTGCTGGTAATGAAACTTGCCCCCCGGCTGGTGGCCCTTTGGCCCTTCTGA

Upstream 100 bases:

>100_bases
TTGACCGGTTGTATGTCATTTCCCTGGAGGATGACCTGACGATCAAGTCGCGGATCGAACGCTACGGCGCAGCTGCTGCG
AAGAGGGATGCCGGCGCGCC

Downstream 100 bases:

>100_bases
CGGGCGTCTCCAATCTCACCAATCGTTAAGTTGACGCTACGTCATGCGGGCGGCATCGACACCCCATGGCCGTTCGGCCT
GATTTCTCCACCTCTAGACT

Product: ExoD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MNRNGTNVPVTNLRTMMRSLVLNTEGEDVTVSELLQAIGRRAHGPVFLLLGFLAVSPLTIIPGANWFIATVILVFALQIV
IGFRHPWLPKGVTEFKFKRAHLVQGIAGGERYAHMVDALVKPRLTFLTEPPFIQVVALVCVLAALITYPLGLVPFGPLLP
SLTVLLFGLALTARDGFVLLLAGCAFGGAVLLVMKLAPRLVALWPF

Sequences:

>Translated_206_residues
MNRNGTNVPVTNLRTMMRSLVLNTEGEDVTVSELLQAIGRRAHGPVFLLLGFLAVSPLTIIPGANWFIATVILVFALQIV
IGFRHPWLPKGVTEFKFKRAHLVQGIAGGERYAHMVDALVKPRLTFLTEPPFIQVVALVCVLAALITYPLGLVPFGPLLP
SLTVLLFGLALTARDGFVLLLAGCAFGGAVLLVMKLAPRLVALWPF
>Mature_206_residues
MNRNGTNVPVTNLRTMMRSLVLNTEGEDVTVSELLQAIGRRAHGPVFLLLGFLAVSPLTIIPGANWFIATVILVFALQIV
IGFRHPWLPKGVTEFKFKRAHLVQGIAGGERYAHMVDALVKPRLTFLTEPPFIQVVALVCVLAALITYPLGLVPFGPLLP
SLTVLLFGLALTARDGFVLLLAGCAFGGAVLLVMKLAPRLVALWPF

Specific function: Required for nodule invasion. Mutations in this gene lead to sensitivity to alkaline conditions which prevents nodule invasion [H]

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1875 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22316; Mature: 22316

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNGTNVPVTNLRTMMRSLVLNTEGEDVTVSELLQAIGRRAHGPVFLLLGFLAVSPLTI
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHC
IPGANWFIATVILVFALQIVIGFRHPWLPKGVTEFKFKRAHLVQGIAGGERYAHMVDALV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KPRLTFLTEPPFIQVVALVCVLAALITYPLGLVPFGPLLPSLTVLLFGLALTARDGFVLL
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHH
LAGCAFGGAVLLVMKLAPRLVALWPF
HHHHHHHHHHHHHHHHHHHHHEECCC
>Mature Secondary Structure
MNRNGTNVPVTNLRTMMRSLVLNTEGEDVTVSELLQAIGRRAHGPVFLLLGFLAVSPLTI
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCHHC
IPGANWFIATVILVFALQIVIGFRHPWLPKGVTEFKFKRAHLVQGIAGGERYAHMVDALV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KPRLTFLTEPPFIQVVALVCVLAALITYPLGLVPFGPLLPSLTVLLFGLALTARDGFVLL
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHH
LAGCAFGGAVLLVMKLAPRLVALWPF
HHHHHHHHHHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1748284; 11481430 [H]