| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yegM [C]
Identifier: 114799470
GI number: 114799470
Start: 2537214
End: 2538206
Strand: Direct
Name: yegM [C]
Synonym: HNE_2429
Alternate gene names: 114799470
Gene position: 2537214-2538206 (Clockwise)
Preceding gene: 114799448
Following gene: 114798247
Centisome position: 68.48
GC content: 61.73
Gene sequence:
>993_bases ATGGCCGCTATTGAAAAACACCGAATGCTGTTGGCTGGTCTTGCTGTCATTGCCTTAGCCAGCGGTGCCTGGGCGCAGAC ACTCACCGTCGAGGAATCAATCGTCGTTGACTACCGGCCCGTGATTGCCCGCATTGAAGCGGGCGATACGGCCACAGGCC GATCCCGCCTGCAGGGCGTGGTCACGCAGCTGAACGCGGTGGAGGGCCAGATCGTGAAAGCGGGCGATGTCGTCGCGGTA GTGACCGATGAAATGATTACGCCGCAGCTCTCAGGGCTCACGTCCCGTATTGAGGGGCTGAAGTCGCAGCTGCGCCAATC CGAGGACGACCTGACGCGGAATGAGGGGCTTCTTGCACGCGGTTTCTATCCCAAAGTACGGCTGGATGAGGAGCGCACAG CACTGGACGTGCTGCGCCGCACGCTTGCTTCTGCCGAAGCAGAACGCCGGGCGCTGTCTGCCCGCGAGGGGGAAGGCCGT ATCCTGGCGCCTGCGGATGCGCATGTTACGGATGTGAATGTTGTAAAAGGCTCAGTGGTGTCGCCGGGGGACGTGCTGGT AAGCTTTTCTACCGTGAACGGCGTTGTGCGGCTTGCTCTGCCTGAGCGCCATGCGGCGACGCTGGTGGAAGGGGAGACGA TTTCGCTCCGCCTGCCCTCACGGTCGAATGACATCCGCACCGCGACCATTATGCGGATCTATCCGGAACTGCGCCAGGGA TCGGTCATTGCCGACGCGACAGTACAGGGCGGGCTGACGGCGCTGTTTGGCGAGCGTGTCGACGTACTGGCGCCTGTCGG TGAACGTAGAGCTGTCCGTATACCGAAAGATTACGTTTCCACCCGGTTTGGGGTGGACTTCGTGCGCGTGGCTGTGGGCG ACCGTTTCATCGACGCCCCCGTCGCGCTGGCGGCGCCTCTGGTGGATGATCAGGGCCAGTATGAAATCCTCTCGGGCCTG AAGCCCGGCGATAAAATCCAGAAACCGGAATAA
Upstream 100 bases:
>100_bases GGCGCGGAGGCCGCGCATATGGCCGGCGGCATCGGGGCCTGGAAGTCGGCGGGGTTGCCGTGTGTTTCCATAAACCCGGC GACCGGAGAGGTGGAAGATC
Downstream 100 bases:
>100_bases CGCCGATGAAACCGGACCTTTCGGGCGCCATTACACGGTCGACCATCCGGTCGCCCCTGACGCCACTTTTCCTGCTGACG GCGCTGGCTGTCGGGCTTAT
Product: RND family efflux transporter MFP subunit
Products: NA
Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; RND Family Efflux Pump Membrane Fusion Protein; HlyD Family Secretion Protein; RND Family Efflux Transporter Subunit MFP; Efflux Transporter Rnd Family Mfp Subunit
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MAAIEKHRMLLAGLAVIALASGAWAQTLTVEESIVVDYRPVIARIEAGDTATGRSRLQGVVTQLNAVEGQIVKAGDVVAV VTDEMITPQLSGLTSRIEGLKSQLRQSEDDLTRNEGLLARGFYPKVRLDEERTALDVLRRTLASAEAERRALSAREGEGR ILAPADAHVTDVNVVKGSVVSPGDVLVSFSTVNGVVRLALPERHAATLVEGETISLRLPSRSNDIRTATIMRIYPELRQG SVIADATVQGGLTALFGERVDVLAPVGERRAVRIPKDYVSTRFGVDFVRVAVGDRFIDAPVALAAPLVDDQGQYEILSGL KPGDKIQKPE
Sequences:
>Translated_330_residues MAAIEKHRMLLAGLAVIALASGAWAQTLTVEESIVVDYRPVIARIEAGDTATGRSRLQGVVTQLNAVEGQIVKAGDVVAV VTDEMITPQLSGLTSRIEGLKSQLRQSEDDLTRNEGLLARGFYPKVRLDEERTALDVLRRTLASAEAERRALSAREGEGR ILAPADAHVTDVNVVKGSVVSPGDVLVSFSTVNGVVRLALPERHAATLVEGETISLRLPSRSNDIRTATIMRIYPELRQG SVIADATVQGGLTALFGERVDVLAPVGERRAVRIPKDYVSTRFGVDFVRVAVGDRFIDAPVALAAPLVDDQGQYEILSGL KPGDKIQKPE >Mature_329_residues AAIEKHRMLLAGLAVIALASGAWAQTLTVEESIVVDYRPVIARIEAGDTATGRSRLQGVVTQLNAVEGQIVKAGDVVAVV TDEMITPQLSGLTSRIEGLKSQLRQSEDDLTRNEGLLARGFYPKVRLDEERTALDVLRRTLASAEAERRALSAREGEGRI LAPADAHVTDVNVVKGSVVSPGDVLVSFSTVNGVVRLALPERHAATLVEGETISLRLPSRSNDIRTATIMRIYPELRQGS VIADATVQGGLTALFGERVDVLAPVGERRAVRIPKDYVSTRFGVDFVRVAVGDRFIDAPVALAAPLVDDQGQYEILSGLK PGDKIQKPE
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35457; Mature: 35326
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAIEKHRMLLAGLAVIALASGAWAQTLTVEESIVVDYRPVIARIEAGDTATGRSRLQGV CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCEEEEEEECCCCCCHHHHHHHH VTQLNAVEGQIVKAGDVVAVVTDEMITPQLSGLTSRIEGLKSQLRQSEDDLTRNEGLLAR HHHHHHHCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEE GFYPKVRLDEERTALDVLRRTLASAEAERRALSAREGEGRILAPADAHVTDVNVVKGSVV CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEEEECCCC SPGDVLVSFSTVNGVVRLALPERHAATLVEGETISLRLPSRSNDIRTATIMRIYPELRQG CCCCEEEEEECCCCEEEEECCCCCCCEEECCCEEEEECCCCCCCCCEEHHHHHHHHHHCC SVIADATVQGGLTALFGERVDVLAPVGERRAVRIPKDYVSTRFGVDFVRVAVGDRFIDAP CEEEECHHCCCHHHHHCCCHHEECCCCCCCEEECCHHHHHHHCCHHHEEEHHCCCCCCCC VALAAPLVDDQGQYEILSGLKPGDKIQKPE HHHHCCCCCCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure AAIEKHRMLLAGLAVIALASGAWAQTLTVEESIVVDYRPVIARIEAGDTATGRSRLQGV CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCEEEEEEECCCCCCHHHHHHHH VTQLNAVEGQIVKAGDVVAVVTDEMITPQLSGLTSRIEGLKSQLRQSEDDLTRNEGLLAR HHHHHHHCCEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEE GFYPKVRLDEERTALDVLRRTLASAEAERRALSAREGEGRILAPADAHVTDVNVVKGSVV CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEEEEECCCC SPGDVLVSFSTVNGVVRLALPERHAATLVEGETISLRLPSRSNDIRTATIMRIYPELRQG CCCCEEEEEECCCCEEEEECCCCCCCEEECCCEEEEECCCCCCCCCEEHHHHHHHHHHCC SVIADATVQGGLTALFGERVDVLAPVGERRAVRIPKDYVSTRFGVDFVRVAVGDRFIDAP CEEEECHHCCCHHHHHCCCHHEECCCCCCCEEECCHHHHHHHCCHHHEEEHHCCCCCCCC VALAAPLVDDQGQYEILSGLKPGDKIQKPE HHHHCCCCCCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA