Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 114798552

GI number: 114798552

Start: 3227298

End: 3228245

Strand: Reverse

Name: yadH [H]

Synonym: HNE_3056

Alternate gene names: 114798552

Gene position: 3228245-3227298 (Counterclockwise)

Preceding gene: 114800483

Following gene: 114798608

Centisome position: 87.13

GC content: 57.49

Gene sequence:

>948_bases
ATGGGCCCCGCGCATTCCACAGGGTTTCTATATCTTGTGGTAAGGATTCCACAGGGTGGCGAGATGGAAAAGTCGCGGGC
ACCCCTCGCGAAACGTACCGGCTTCGCCTATTTGCGTTGCATGGATACGATTCCCGGCAGTGCGCAATCTCGTCTTCGCC
AATATGGCGCTTTCAACGGCCTTGGGCTGTGGACACTTTATAAAAGAGAGGTCGGGCGGTTCCTGAAGGTGTGGATGCAG
ACCGTTTTCGCGCCTGTGGTGACTACGCTGCTGTTCATGACCGTGTTCAAACTCGCCTTCGGGGATCGCGGGCGGCTGAC
CGGCGATTTCGAGGGCATGAACTATAACGACTTCCTGGCGCCGGGCCTGATCATGATGGCCATCCTCCAGAACGCCTTTT
CCAATACGAGTTCCAGCCTGCTGCAGGCGAAGTTCAATGCGACCCATGTCGATTTCCTGATGCCGCCGCTGTCGCCGCTG
GAGCTGACGATTGCGTTCCTGGGCGGGGCGGTCACGCGCGGCCTCGTGGTCGCCGCGATCTCGGCCATTGCGATCCAGCT
GTCGGGGCTCGCCAACCTGCATGTGGCCCATATCTGGCCAATTGTCTGGTTTACCCTGACATCGGCCATCATTCTTGGGG
CGCTCGGCGCCTATGGCGGCATCTGGGCTGACAAGTTTGACCATCTGGCAGCCGTCACCAACTTCATCATTGTGCCGCTG
ACGTTTCTTTCAGGCACCTTTTACGACATCAAGGTGATGGTGGAGCCGTTTCAGACGCTCGCCTATCTCAACCCGATTTT
TTACATGATCGACGGATACCGATATGGGCATCTGGGTGTTGCGAATGGATCTATCCTGGTGGGAGCTATTTACACGGGTG
TTCTCGCGCTGGCGTCGATGATCTGGATATGGCTGCTGTTCCGCCGGGGCTACAAGCTGAAGGCGTAA

Upstream 100 bases:

>100_bases
GCTGCGCACAGAGCCCAGACCCACTAGATGTTGTAACGGCTGGTAAGCACCGCTCTTCTGAACACCTATATATCGTATCA
GGAGCGAAACGAAACACAAC

Downstream 100 bases:

>100_bases
AGCAGCCTGGTTCGGCGTGGCTGGCGGGAATTCCCCCAATACGCGACCAGGGTTGACGGATTAACCATCCTGGCACCCCA
TGACCTGGCGGAGGGCGAAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGPAHSTGFLYLVVRIPQGGEMEKSRAPLAKRTGFAYLRCMDTIPGSAQSRLRQYGAFNGLGLWTLYKREVGRFLKVWMQ
TVFAPVVTTLLFMTVFKLAFGDRGRLTGDFEGMNYNDFLAPGLIMMAILQNAFSNTSSSLLQAKFNATHVDFLMPPLSPL
ELTIAFLGGAVTRGLVVAAISAIAIQLSGLANLHVAHIWPIVWFTLTSAIILGALGAYGGIWADKFDHLAAVTNFIIVPL
TFLSGTFYDIKVMVEPFQTLAYLNPIFYMIDGYRYGHLGVANGSILVGAIYTGVLALASMIWIWLLFRRGYKLKA

Sequences:

>Translated_315_residues
MGPAHSTGFLYLVVRIPQGGEMEKSRAPLAKRTGFAYLRCMDTIPGSAQSRLRQYGAFNGLGLWTLYKREVGRFLKVWMQ
TVFAPVVTTLLFMTVFKLAFGDRGRLTGDFEGMNYNDFLAPGLIMMAILQNAFSNTSSSLLQAKFNATHVDFLMPPLSPL
ELTIAFLGGAVTRGLVVAAISAIAIQLSGLANLHVAHIWPIVWFTLTSAIILGALGAYGGIWADKFDHLAAVTNFIIVPL
TFLSGTFYDIKVMVEPFQTLAYLNPIFYMIDGYRYGHLGVANGSILVGAIYTGVLALASMIWIWLLFRRGYKLKA
>Mature_314_residues
GPAHSTGFLYLVVRIPQGGEMEKSRAPLAKRTGFAYLRCMDTIPGSAQSRLRQYGAFNGLGLWTLYKREVGRFLKVWMQT
VFAPVVTTLLFMTVFKLAFGDRGRLTGDFEGMNYNDFLAPGLIMMAILQNAFSNTSSSLLQAKFNATHVDFLMPPLSPLE
LTIAFLGGAVTRGLVVAAISAIAIQLSGLANLHVAHIWPIVWFTLTSAIILGALGAYGGIWADKFDHLAAVTNFIIVPLT
FLSGTFYDIKVMVEPFQTLAYLNPIFYMIDGYRYGHLGVANGSILVGAIYTGVLALASMIWIWLLFRRGYKLKA

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=257, Percent_Identity=33.4630350194552, Blast_Score=150, Evalue=8e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 34655; Mature: 34524

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPAHSTGFLYLVVRIPQGGEMEKSRAPLAKRTGFAYLRCMDTIPGSAQSRLRQYGAFNG
CCCCCCCCEEEEEEECCCCCCCCHHCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCC
LGLWTLYKREVGRFLKVWMQTVFAPVVTTLLFMTVFKLAFGDRGRLTGDFEGMNYNDFLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
PGLIMMAILQNAFSNTSSSLLQAKFNATHVDFLMPPLSPLELTIAFLGGAVTRGLVVAAI
HHHHHHHHHHHHHCCCHHHHHHHHCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
SAIAIQLSGLANLHVAHIWPIVWFTLTSAIILGALGAYGGIWADKFDHLAAVTNFIIVPL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
TFLSGTFYDIKVMVEPFQTLAYLNPIFYMIDGYRYGHLGVANGSILVGAIYTGVLALASM
HHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCHHHHHHHHHHHHHHH
IWIWLLFRRGYKLKA
HHHHHHHHCCCCCCC
>Mature Secondary Structure 
GPAHSTGFLYLVVRIPQGGEMEKSRAPLAKRTGFAYLRCMDTIPGSAQSRLRQYGAFNG
CCCCCCCEEEEEEECCCCCCCCHHCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHCCCCC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HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]