| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is penA [H]
Identifier: 114798338
GI number: 114798338
Start: 3200258
End: 3201901
Strand: Reverse
Name: penA [H]
Synonym: HNE_3030
Alternate gene names: 114798338
Gene position: 3201901-3200258 (Counterclockwise)
Preceding gene: 114797112
Following gene: 114798974
Centisome position: 86.42
GC content: 65.63
Gene sequence:
>1644_bases ATGAGCGAAGCCTCCCGGGATCGTACACGGCTCGTCGGGCTGGCCATCGGCCTGCTCTTCGTGCTGATGGCGGGCCGGGG CGGGTTTCTGGCGCTGTCGGATGCGCCGTCCAATGCCGCAGTATATCCCGTGGCAGCCTCTCTCGAAACGCGTGCGGACA TTGTCGACCGGCATGGCGAATTGCTGGCGACCTCGGTCGTCTCCTGGTCACTCTGGGCCAATCCGAGCCTGATCTGGGAC GGCGCGGACGCGGCAAGACAGCTGGCAGGCGTGTTGCCCGATCTCAGCGAGGCAGACCTCGGTGCCCGACTGTCTGATCC TGACCGTAAATTTGTCTGGGTGAAGCGGGGACTGACGCCGCGCCAGCGCGAGCATGTCGTGGCGCTGGGCCTTGAGGGGC TCGATTTCCGCGAGGAAGCGCGCCGGGCCTATCCGCGCGGTGTTCTGGCCGGACAGGTGCTGGGCTTCACCAATGTCGAC GGCAAGGGCATCGCCGGCATCGAGCTGGCCCATGATGAAGCGCTGCAGGGCGGGGGAGACCCCGTTCGTCTGACGCTGGA CATCGGCGCGCAGGCGGCGCTGGAGGCAGAGCTTGCGACGGCCGCCATGGATTATGACATGAAGGGCGGCGCGGCGATCC TGATGGATACGCGCAGCGGCGAAATCCGCGGCATGGCCAGCTGGCCGCCTTTTGACCCCAACCGCGCCAGCGATACGCCT GCGGATGATCCGGCCCGAACCAACCGGGCCATCAGCGCGGTCTATGAGCTGGGCTCGATCTTCAAGCCGTTCACCATTGC CGCCGCGCTTGAGGTCGGGGCGATCACGCCGGAAGACCGGTTTCAGGTCGGCCAGCCCCTGCTCATTCAGGGGCGGCGGA TTTCGGACACGCACTGGTTTGCCCGTGACGCGAATGTCTGGAAGATCCTCTCGGAAAGCTCCAATATCGGCACCGTTCAG GTAAATTATGCGCTGGGCACGCAGCGCCAGCAGCAGTTCCTGGAGCGCGCGGGCCTGACGCGCCGGGCGCCGATCGATCT GCCAGGATCGGCCGCGCCGCTGATGCCGGAGCGGTTTGATGAGGTGACGGCGGCGACGGTGTCCTACGGGCACGGTATCT CCGTGACGCCGCTGGCGTTCCTGCTGGCCTTTTCGGCGTTCGGAAATGACGGCCTGATGATCGCGCCCGTGCTTGTCGAG GCGGGGGCCGATGCGGGCGATATTGCCGCGCCGGCGCCCGTGCGTCTCTTCTCTGAGGAAACCACCCATCTGGTGACGCA GATGATGCGTGACACCGTACTTCAGGGGACAGCCCGGCGCGCTGATGTTGCCGGATACCGGGTGGCCGGAAAGACCGGCA CCGCCGAAAAGCCGATTGCGGGCGGATATGCCAAGGACCGGAACGTTTCGAGCTTTGCTGCTGTGTTTCCCGCAGACAGC CCCCAATATGCCCTGATTGTGACGCTGGATGAGCCCAAGGCCATCGAGGACGGAACCATGACCGCCGCAGTGAATGCCGC GCCGGTTGCCGGGCGCATCATTGAGCGCGTTGCGCCGTTGCTTGAGGTCGATCCGCGATTTGAGGATCTCCGGCCTGCCA CAGCGCCGCCTCAGGCCCTCTCCCAGAACAGGAGCGAACTTTGA
Upstream 100 bases:
>100_bases CGACGCTTCAGGCGCTGACGGTCTCCGAAGATGCAGTCTCCGAAGATGAAGAGGGCAGCGACGCTGCCTCACCGGCGCAA ACGCCTGCGGAGGCGCCCAG
Downstream 100 bases:
>100_bases AACTCTCGGACCTTTTCCCCCTCGCCGAGAATGGCGAGACCGAGATACTCGGTATGACGTCAGACAGCCGGAAGGTGCAG CCTGGCTGGCTGTTTGCGGC
Product: putative penicillin-binding protein 2
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MSEASRDRTRLVGLAIGLLFVLMAGRGGFLALSDAPSNAAVYPVAASLETRADIVDRHGELLATSVVSWSLWANPSLIWD GADAARQLAGVLPDLSEADLGARLSDPDRKFVWVKRGLTPRQREHVVALGLEGLDFREEARRAYPRGVLAGQVLGFTNVD GKGIAGIELAHDEALQGGGDPVRLTLDIGAQAALEAELATAAMDYDMKGGAAILMDTRSGEIRGMASWPPFDPNRASDTP ADDPARTNRAISAVYELGSIFKPFTIAAALEVGAITPEDRFQVGQPLLIQGRRISDTHWFARDANVWKILSESSNIGTVQ VNYALGTQRQQQFLERAGLTRRAPIDLPGSAAPLMPERFDEVTAATVSYGHGISVTPLAFLLAFSAFGNDGLMIAPVLVE AGADAGDIAAPAPVRLFSEETTHLVTQMMRDTVLQGTARRADVAGYRVAGKTGTAEKPIAGGYAKDRNVSSFAAVFPADS PQYALIVTLDEPKAIEDGTMTAAVNAAPVAGRIIERVAPLLEVDPRFEDLRPATAPPQALSQNRSEL
Sequences:
>Translated_547_residues MSEASRDRTRLVGLAIGLLFVLMAGRGGFLALSDAPSNAAVYPVAASLETRADIVDRHGELLATSVVSWSLWANPSLIWD GADAARQLAGVLPDLSEADLGARLSDPDRKFVWVKRGLTPRQREHVVALGLEGLDFREEARRAYPRGVLAGQVLGFTNVD GKGIAGIELAHDEALQGGGDPVRLTLDIGAQAALEAELATAAMDYDMKGGAAILMDTRSGEIRGMASWPPFDPNRASDTP ADDPARTNRAISAVYELGSIFKPFTIAAALEVGAITPEDRFQVGQPLLIQGRRISDTHWFARDANVWKILSESSNIGTVQ VNYALGTQRQQQFLERAGLTRRAPIDLPGSAAPLMPERFDEVTAATVSYGHGISVTPLAFLLAFSAFGNDGLMIAPVLVE AGADAGDIAAPAPVRLFSEETTHLVTQMMRDTVLQGTARRADVAGYRVAGKTGTAEKPIAGGYAKDRNVSSFAAVFPADS PQYALIVTLDEPKAIEDGTMTAAVNAAPVAGRIIERVAPLLEVDPRFEDLRPATAPPQALSQNRSEL >Mature_546_residues SEASRDRTRLVGLAIGLLFVLMAGRGGFLALSDAPSNAAVYPVAASLETRADIVDRHGELLATSVVSWSLWANPSLIWDG ADAARQLAGVLPDLSEADLGARLSDPDRKFVWVKRGLTPRQREHVVALGLEGLDFREEARRAYPRGVLAGQVLGFTNVDG KGIAGIELAHDEALQGGGDPVRLTLDIGAQAALEAELATAAMDYDMKGGAAILMDTRSGEIRGMASWPPFDPNRASDTPA DDPARTNRAISAVYELGSIFKPFTIAAALEVGAITPEDRFQVGQPLLIQGRRISDTHWFARDANVWKILSESSNIGTVQV NYALGTQRQQQFLERAGLTRRAPIDLPGSAAPLMPERFDEVTAATVSYGHGISVTPLAFLLAFSAFGNDGLMIAPVLVEA GADAGDIAAPAPVRLFSEETTHLVTQMMRDTVLQGTARRADVAGYRVAGKTGTAEKPIAGGYAKDRNVSSFAAVFPADSP QYALIVTLDEPKAIEDGTMTAAVNAAPVAGRIIERVAPLLEVDPRFEDLRPATAPPQALSQNRSEL
Specific function: Synthesis of cross-linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=511, Percent_Identity=30.7240704500978, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI1786854, Length=576, Percent_Identity=25, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 58192; Mature: 58061
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEASRDRTRLVGLAIGLLFVLMAGRGGFLALSDAPSNAAVYPVAASLETRADIVDRHGE CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHCCC LLATSVVSWSLWANPSLIWDGADAARQLAGVLPDLSEADLGARLSDPDRKFVWVKRGLTP EEEHHHHEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCC RQREHVVALGLEGLDFREEARRAYPRGVLAGQVLGFTNVDGKGIAGIELAHDEALQGGGD CHHCCEEEECCCCCCHHHHHHHHCCCCCHHHHEEEEECCCCCCCEEEEECCHHHHCCCCC PVRLTLDIGAQAALEAELATAAMDYDMKGGAAILMDTRSGEIRGMASWPPFDPNRASDTP EEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCC ADDPARTNRAISAVYELGSIFKPFTIAAALEVGAITPEDRFQVGQPLLIQGRRISDTHWF CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCCEEEECCEECCCEEE ARDANVWKILSESSNIGTVQVNYALGTQRQQQFLERAGLTRRAPIDLPGSAAPLMPERFD ECCCCEEEEECCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH EVTAATVSYGHGISVTPLAFLLAFSAFGNDGLMIAPVLVEAGADAGDIAAPAPVRLFSEE HHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEHEECCCCCCCCCCCCCCEEHHHH TTHLVTQMMRDTVLQGTARRADVAGYRVAGKTGTAEKPIAGGYAKDRNVSSFAAVFPADS HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCC PQYALIVTLDEPKAIEDGTMTAAVNAAPVAGRIIERVAPLLEVDPRFEDLRPATAPPQAL CCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHH SQNRSEL HCCCCCC >Mature Secondary Structure SEASRDRTRLVGLAIGLLFVLMAGRGGFLALSDAPSNAAVYPVAASLETRADIVDRHGE CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHCCC LLATSVVSWSLWANPSLIWDGADAARQLAGVLPDLSEADLGARLSDPDRKFVWVKRGLTP EEEHHHHEEEECCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCC RQREHVVALGLEGLDFREEARRAYPRGVLAGQVLGFTNVDGKGIAGIELAHDEALQGGGD CHHCCEEEECCCCCCHHHHHHHHCCCCCHHHHEEEEECCCCCCCEEEEECCHHHHCCCCC PVRLTLDIGAQAALEAELATAAMDYDMKGGAAILMDTRSGEIRGMASWPPFDPNRASDTP EEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCC ADDPARTNRAISAVYELGSIFKPFTIAAALEVGAITPEDRFQVGQPLLIQGRRISDTHWF CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCCEEEECCEECCCEEE ARDANVWKILSESSNIGTVQVNYALGTQRQQQFLERAGLTRRAPIDLPGSAAPLMPERFD ECCCCEEEEECCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH EVTAATVSYGHGISVTPLAFLLAFSAFGNDGLMIAPVLVEAGADAGDIAAPAPVRLFSEE HHHHHHEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEHEECCCCCCCCCCCCCCEEHHHH TTHLVTQMMRDTVLQGTARRADVAGYRVAGKTGTAEKPIAGGYAKDRNVSSFAAVFPADS HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCC PQYALIVTLDEPKAIEDGTMTAAVNAAPVAGRIIERVAPLLEVDPRFEDLRPATAPPQAL CCEEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHH SQNRSEL HCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3126399 [H]