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The map label for this gene is phyR [H]

Identifier: 114798202

GI number: 114798202

Start: 2445725

End: 2446513

Strand: Direct

Name: phyR [H]

Synonym: HNE_2344

Alternate gene names: 114798202

Gene position: 2445725-2446513 (Clockwise)

Preceding gene: 114797486

Following gene: 114797451

Centisome position: 66.01

GC content: 58.94

Gene sequence:

>789_bases
ATGAGTTTGATCGCCCAATACGGCCCGCATCTCCCCTTCCTGCGCCGCTATGCCCGTGCTTTGACGGGCTCTCAGGAGAG
CGGCGATGCCTATATCCGGGCGTGCCTTGAGGCGTTGAGCGAAGACCCTGCCCTCATGGTAGAGGCGTCATCAACCCGTG
TCACCCTGTACCGCTTCTTTCATGCGATCTGGTCAACGACCGGGGCAAAACTGGAAACGGCCGGTAAATTTTCCGGTGCT
TCGCCCGAAGAACGCCTGCGCAAGCTCGCGCCGATCCAGCGTCAGGCATTTCTGCTGACGACGCTGGAAGGCTTCAGCCG
TCCGGAAGCCTGCGAAATTCTGGAGCAAACCCCTGCGGAGCTGGAAAAGCTGATCGAGGCCGCGCACAAGGAAATCGAGC
AACAACTTTCCACCTCGGTCCTCATCATTGAAGACGAGCCGATCATTGCGGCTGACCTGGCCAACCTCGTTGAGGATCTG
GGCCACACCTTCGCCGGCAACGCAGCCACGCGCAAACATGCCGTTGAGCTTGCCCGCCGGGTGAAGCCTGGCCTTATCCT
GTGCGATGTTCAGCTTGCGGACAATTCTTCGGGCATTGATGCCGTGCAGGACATTCTGGCCGACTTTGACCTGCCAGTGA
TCTTCATCACGGCGTTTCCAGAGCGCCTTCTCACGGGCGAGCGACCAGAGCCTACCTACCTGATTACCAAACCGTTTCAG
GATGATACAGTCAAAGCGGCGATCAGCCAGGCTCTCTTCTTTCACGCTCAGGCAGAGCCCCAGACCTGA

Upstream 100 bases:

>100_bases
GGTTCCACGCCAAACTGCACATTGCGAAATATTTCCGCAGCGTATGAAACCAATTTGTGTCCCGTGCGTTGTAACGCTCA
GATAGCAAAGAGGTTCCAAT

Downstream 100 bases:

>100_bases
GGAATTATTGGAACCATTCGCTTTCTCTTTCGTTGATCCTGCAAGGACATTGAAAAGGAGAAAGCGATGGCTACCCCCCA
AACTTCCACTCGAAAGTCGC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSLIAQYGPHLPFLRRYARALTGSQESGDAYIRACLEALSEDPALMVEASSTRVTLYRFFHAIWSTTGAKLETAGKFSGA
SPEERLRKLAPIQRQAFLLTTLEGFSRPEACEILEQTPAELEKLIEAAHKEIEQQLSTSVLIIEDEPIIAADLANLVEDL
GHTFAGNAATRKHAVELARRVKPGLILCDVQLADNSSGIDAVQDILADFDLPVIFITAFPERLLTGERPEPTYLITKPFQ
DDTVKAAISQALFFHAQAEPQT

Sequences:

>Translated_262_residues
MSLIAQYGPHLPFLRRYARALTGSQESGDAYIRACLEALSEDPALMVEASSTRVTLYRFFHAIWSTTGAKLETAGKFSGA
SPEERLRKLAPIQRQAFLLTTLEGFSRPEACEILEQTPAELEKLIEAAHKEIEQQLSTSVLIIEDEPIIAADLANLVEDL
GHTFAGNAATRKHAVELARRVKPGLILCDVQLADNSSGIDAVQDILADFDLPVIFITAFPERLLTGERPEPTYLITKPFQ
DDTVKAAISQALFFHAQAEPQT
>Mature_261_residues
SLIAQYGPHLPFLRRYARALTGSQESGDAYIRACLEALSEDPALMVEASSTRVTLYRFFHAIWSTTGAKLETAGKFSGAS
PEERLRKLAPIQRQAFLLTTLEGFSRPEACEILEQTPAELEKLIEAAHKEIEQQLSTSVLIIEDEPIIAADLANLVEDLG
HTFAGNAATRKHAVELARRVKPGLILCDVQLADNSSGIDAVQDILADFDLPVIFITAFPERLLTGERPEPTYLITKPFQD
DTVKAAISQALFFHAQAEPQT

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28832; Mature: 28701

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIAQYGPHLPFLRRYARALTGSQESGDAYIRACLEALSEDPALMVEASSTRVTLYRFF
CCCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
HAIWSTTGAKLETAGKFSGASPEERLRKLAPIQRQAFLLTTLEGFSRPEACEILEQTPAE
HHHHHCCCCCEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHH
LEKLIEAAHKEIEQQLSTSVLIIEDEPIIAADLANLVEDLGHTFAGNAATRKHAVELARR
HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VKPGLILCDVQLADNSSGIDAVQDILADFDLPVIFITAFPERLLTGERPEPTYLITKPFQ
CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCEEEECCCC
DDTVKAAISQALFFHAQAEPQT
CHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLIAQYGPHLPFLRRYARALTGSQESGDAYIRACLEALSEDPALMVEASSTRVTLYRFF
CCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
HAIWSTTGAKLETAGKFSGASPEERLRKLAPIQRQAFLLTTLEGFSRPEACEILEQTPAE
HHHHHCCCCCEECCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHCCHHH
LEKLIEAAHKEIEQQLSTSVLIIEDEPIIAADLANLVEDLGHTFAGNAATRKHAVELARR
HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VKPGLILCDVQLADNSSGIDAVQDILADFDLPVIFITAFPERLLTGERPEPTYLITKPFQ
CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCCEEEECCCC
DDTVKAAISQALFFHAQAEPQT
CHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA