Click here to switch to the map view.

The map label for this gene is comF [H]

Identifier: 114797458

GI number: 114797458

Start: 3346363

End: 3347121

Strand: Reverse

Name: comF [H]

Synonym: HNE_3170

Alternate gene names: 114797458

Gene position: 3347121-3346363 (Counterclockwise)

Preceding gene: 114797894

Following gene: 114800009

Centisome position: 90.34

GC content: 69.7

Gene sequence:

>759_bases
ATGAAGGCTGGCAGGCTTGCGGCCAAGGGCCTATTCCGCCGGACGCGGGATTTCCTGTGGCCGCCGCGGTCCCTGATCAG
CGGAGACCGGGGCGAGGGCGCGGGCCCCTTGCGCCCGGATGAGTTCACGAAAATCCGTTTCATTACAGACCCCGTCTGCA
ATCGCTGCGGTGTTCCGCAGGACTTTGACGCGGGCCCGGACGCCGAATGCCCCGCCTGCATGGCCCGCCCGCCCCGCTGG
GGCCGGGCGCGGGCGGCGTTCGTTTATGACGATGTCTCCCGCCGCCCCGTGCTTGATCTCAAGCGGGCCGGGCGCCGGGA
CGGCCTGGAGACCCTTTCGGGCTGGATGGTGCAGGCCGGCGGCGCGCTGGCCGATGAGGCAGATCTGATCGTGCCGGTGC
CGCTGCACTATACCCGCCTTGTCATGCGCGGGTTCAACCAGTCTGCCTGGCTGGCGCAGGCCATCGGGGAGGCGTCCGGC
CGGCGCGTGTCGGTCGATGCGCTCAAGCGGAAGCGGCGCACGCCCAGCCAGGCGGGGCTCTCGAACCGCGCGCGGCGGCG
GAATGTAACCGGCGCCTTCGATGTGCGCGCCAGCCGCCGCAAACTGGAGGAAGGGCGGCGTATCCTGCTGGTCGATGACG
TGCTGACAACTGGCGCGACGCTGAACGCCTGCACACGGGCGCTGAAACGAGCAGGCGCGCGGCAGATCGACGTTCTGGTG
CTGGCGCGCGTTGTCCGCGCCACGGATGTCACCATATAA

Upstream 100 bases:

>100_bases
GTCATAGTCCTGAAAGTGCCGGGCAAAGGTCTGCCGGCGAGCTTTGAGCTTGTCGCGGTCGAAAATCTGCGGAGGAGCGG
CGGGGGACATGGACGCGGAT

Downstream 100 bases:

>100_bases
CGGTTTGGTGACGGGCTCAGGTCAGACTTGTCCTGAAATGTCCCGCTTTGACGAAAGGATTTCGCCCCATGGCGAAGGTT
ACGATTTATACCCGCGCATT

Product: ComF family protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKAGRLAAKGLFRRTRDFLWPPRSLISGDRGEGAGPLRPDEFTKIRFITDPVCNRCGVPQDFDAGPDAECPACMARPPRW
GRARAAFVYDDVSRRPVLDLKRAGRRDGLETLSGWMVQAGGALADEADLIVPVPLHYTRLVMRGFNQSAWLAQAIGEASG
RRVSVDALKRKRRTPSQAGLSNRARRRNVTGAFDVRASRRKLEEGRRILLVDDVLTTGATLNACTRALKRAGARQIDVLV
LARVVRATDVTI

Sequences:

>Translated_252_residues
MKAGRLAAKGLFRRTRDFLWPPRSLISGDRGEGAGPLRPDEFTKIRFITDPVCNRCGVPQDFDAGPDAECPACMARPPRW
GRARAAFVYDDVSRRPVLDLKRAGRRDGLETLSGWMVQAGGALADEADLIVPVPLHYTRLVMRGFNQSAWLAQAIGEASG
RRVSVDALKRKRRTPSQAGLSNRARRRNVTGAFDVRASRRKLEEGRRILLVDDVLTTGATLNACTRALKRAGARQIDVLV
LARVVRATDVTI
>Mature_252_residues
MKAGRLAAKGLFRRTRDFLWPPRSLISGDRGEGAGPLRPDEFTKIRFITDPVCNRCGVPQDFDAGPDAECPACMARPPRW
GRARAAFVYDDVSRRPVLDLKRAGRRDGLETLSGWMVQAGGALADEADLIVPVPLHYTRLVMRGFNQSAWLAQAIGEASG
RRVSVDALKRKRRTPSQAGLSNRARRRNVTGAFDVRASRRKLEEGRRILLVDDVLTTGATLNACTRALKRAGARQIDVLV
LARVVRATDVTI

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=200, Percent_Identity=30.5, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27798; Mature: 27798

Theoretical pI: Translated: 11.67; Mature: 11.67

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAGRLAAKGLFRRTRDFLWPPRSLISGDRGEGAGPLRPDEFTKIRFITDPVCNRCGVPQ
CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCC
DFDAGPDAECPACMARPPRWGRARAAFVYDDVSRRPVLDLKRAGRRDGLETLSGWMVQAG
CCCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHCC
GALADEADLIVPVPLHYTRLVMRGFNQSAWLAQAIGEASGRRVSVDALKRKRRTPSQAGL
CCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHHH
SNRARRRNVTGAFDVRASRRKLEEGRRILLVDDVLTTGATLNACTRALKRAGARQIDVLV
HHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCHHHCCCHHHHHHHHHHHCCCCHHHHHH
LARVVRATDVTI
HHHHHHHHCCCC
>Mature Secondary Structure
MKAGRLAAKGLFRRTRDFLWPPRSLISGDRGEGAGPLRPDEFTKIRFITDPVCNRCGVPQ
CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCC
DFDAGPDAECPACMARPPRWGRARAAFVYDDVSRRPVLDLKRAGRRDGLETLSGWMVQAG
CCCCCCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHCC
GALADEADLIVPVPLHYTRLVMRGFNQSAWLAQAIGEASGRRVSVDALKRKRRTPSQAGL
CCCCCCCCEEEECCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHHH
SNRARRRNVTGAFDVRASRRKLEEGRRILLVDDVLTTGATLNACTRALKRAGARQIDVLV
HHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCHHHCCCHHHHHHHHHHHCCCCHHHHHH
LARVVRATDVTI
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]