| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is irgA [H]
Identifier: 114797445
GI number: 114797445
Start: 2562670
End: 2565006
Strand: Direct
Name: irgA [H]
Synonym: HNE_2448
Alternate gene names: 114797445
Gene position: 2562670-2565006 (Clockwise)
Preceding gene: 114798426
Following gene: 114799529
Centisome position: 69.17
GC content: 58.58
Gene sequence:
>2337_bases ATGCATGCAAAGCACCGAACATTTGTTACCGCGTCCGCACTAACCATCGCCATTGCTGCCTTTGCGCCGCTCGTCCAGGC GCAGGAAGAAACGCCTGACGACGACAATCGCCGCCTTGGCACAATCACCGTCACCGCGCAGCGCGTTGAGCAGAATATCC AGCAGGTTCCGATCTCCGTGACCGCGATTGGCGGGGACGCTCTGGAAGCGCGCCAGATCGACGGGTTTGACCAATTGCAA TATGTGGCGCCTGGCGTAACCTTCAATTCGGGCGTGAACGCGCGCCAGTCGGCCACCACAATCCGCGGCATTGGAACAGG CCTGTTCAATATTGGGATCGAAGGCAGCGTGGCGATTGCCGTAGACGGCGTTATCATGGGCCGCGAAGGCGCCGGCATCT TCGACTTTGCGGATGTCGAGCGGGTGGAAGTTCTGCGCGGGCCGCAGGGTACGCTGTTCGGCAAGAATGCATCGGCTGGC GTGATCTCGGTGGTCACCAAGAAGCCGACAGAAGGCTTCACCGCCGAAATGAACCTTGGATATGGTTCGTATGATGAGGT GAATGCCTATGGTGCGATCTCGGGCCCGATTGTCGACGGCGTCACGGCACGCCTGTCAGCCTATTCGAACACCCGCGACG GCTACATCAAGAATGTGAACCCGAACTCGCCGCAGGGCCGTGTGAATGAGCGCAATGAACAGGGCGTTCGCGGCAAGGTG AATTTTGCGCTGTCTGACACATCTGATCTGTTGCTCAGCGCAGACTATGTGACGCGCGATCAGGCGGCGGGCGCACTGAC ATACCGTCAGGCATCGGCAGGCGGGCCAGGCACGGGGCTGTTGGGATTTGGTGTTCCGGCGATCCGCAACCAATCGGCGG CGCTCGGCATCGTTCCGGGGCCGGATAATCTCAGCATTGGTTCTGAAGTGCCCTTCTCTTCTGAAATGGATGCCTGGGGC CTTAGCGCGGAATATAGCCGCAGCCTGGGTAATTTCGAGTTTGTATCGCTGACCTCGCATCGCGAATGGAACAGTGTTGA CAATAACGATTCCGATCTCACGCCGCTCCCTATTCTGGAGATCAATTCGGGCGACCTTGGGCAGAACCAGTTCAGCCAGG AATTCCGGCTCGTCTCCCCGCGGGACAAAGCATTCACATACACGCTGGGCGCTTACTACTTCACGCAGGACATTGATCAG AACAACATTCAGGCGGGCACTGCCGGGCTCAACCTTCTTGGCGCGCTTCCGGCTGGCGCGCGGGTCGGCACTCGCCTGGA GTCGGAATTCAGCGAGACCAATTATGCCGTATTCGGACAGGGTGAGTATGCTGTCACAGATAAGCTATCGTTGATCGGCG GCCTGCGCGTACTCAATTCAGAAGTTGAGGGCAGTCAGGAGAAATTCGCCGCCGCTGGCGCTGTCGCTCCGTTTGCAGGA CAAGTTGTTTCGAACGGCGTGCAGAGCGCCAGCGACGAGGATACCGCGCTCGTATGGCGCCTGGGCGCGCAATACTTCGT GAATGATGACACGAACCTTTTTGCAACGGTCACACGCGGCTATAAATCTGCGGGTATCGTGCAGGGCCTGACGATCAACC CCGTTAGCGGGACCACCCTTCCAACCGTTGAAGCGGAAATCCCGACGCAGTTTGAAGCGGGCATCCGCAGGTCTTCCGTT GACAGACGTCTGGTTACCAACTTCACAGGTTTCTATGGGCAAATTGAGGACTTCCAGGCGCAGACGTTGGTGCCCGGACC TTCGGGAACGTCGATCTTCACTGTGGCCAATGCCGGCAAGGCAGAGACCTACGGATTTGAAAGTGAAATCACGGCGTTGC CAACCGAAAACCTCACGCTCTCGGCCGCAATCGCCTATACCAATGCAACGTTCGATGAGTTTACCGGCGCGCCCTGCTAT CAGTTGCAGACGCCCGCGCAGGGTTGCAGCGGCACACCTGCTTCACAGGATCTCTCCGGCAAGCGCCTGCCCAACTCACC GGAATGGGTCGTCAACGCGCTCGCACGCTATGACTTCGACCTCACCGCGCAGAATGCTGCCTTCGTGCAATTGGGCGCGC AGTATCGCAGCGACACGATGTCGGGCCTGGCGAATGATCCCAATACGGTGATTGATGCCTACACCCTTCTGGACATGCAG GTGGGCGTGAACTTCTGGGATGATCGCGCGACATTCACCGTGTTCGGACGTAACCTGACGGACGAGAATTTTGCAGAGGC AATCGTTGCCATGCCATTCGACACGGGCGGGTATGCGCAGTTCGTCACGTTGGAAGCTCAGAGGACGTGGGGCGCGAAAC TGTCCCTGCGTTACTGA
Upstream 100 bases:
>100_bases AATTTTCTGAACGGAGACATTAACAAGCCCCATTGACAAACTTTCCATTTGTCGAAATTTTCCGCCCGGAAAGCTCTAAT GCTTCCGGGAGGATAAAATC
Downstream 100 bases:
>100_bases TCATACGGACGAAACAGGACGCCAAACGCGCGCCTCATAAACTAAACGGCTGGGCGGCCGTTACTGGCTGCCCAGCGCCT TCTTCCGGTATCTGGAAAGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 778; Mature: 778
Protein sequence:
>778_residues MHAKHRTFVTASALTIAIAAFAPLVQAQEETPDDDNRRLGTITVTAQRVEQNIQQVPISVTAIGGDALEARQIDGFDQLQ YVAPGVTFNSGVNARQSATTIRGIGTGLFNIGIEGSVAIAVDGVIMGREGAGIFDFADVERVEVLRGPQGTLFGKNASAG VISVVTKKPTEGFTAEMNLGYGSYDEVNAYGAISGPIVDGVTARLSAYSNTRDGYIKNVNPNSPQGRVNERNEQGVRGKV NFALSDTSDLLLSADYVTRDQAAGALTYRQASAGGPGTGLLGFGVPAIRNQSAALGIVPGPDNLSIGSEVPFSSEMDAWG LSAEYSRSLGNFEFVSLTSHREWNSVDNNDSDLTPLPILEINSGDLGQNQFSQEFRLVSPRDKAFTYTLGAYYFTQDIDQ NNIQAGTAGLNLLGALPAGARVGTRLESEFSETNYAVFGQGEYAVTDKLSLIGGLRVLNSEVEGSQEKFAAAGAVAPFAG QVVSNGVQSASDEDTALVWRLGAQYFVNDDTNLFATVTRGYKSAGIVQGLTINPVSGTTLPTVEAEIPTQFEAGIRRSSV DRRLVTNFTGFYGQIEDFQAQTLVPGPSGTSIFTVANAGKAETYGFESEITALPTENLTLSAAIAYTNATFDEFTGAPCY QLQTPAQGCSGTPASQDLSGKRLPNSPEWVVNALARYDFDLTAQNAAFVQLGAQYRSDTMSGLANDPNTVIDAYTLLDMQ VGVNFWDDRATFTVFGRNLTDENFAEAIVAMPFDTGGYAQFVTLEAQRTWGAKLSLRY
Sequences:
>Translated_778_residues MHAKHRTFVTASALTIAIAAFAPLVQAQEETPDDDNRRLGTITVTAQRVEQNIQQVPISVTAIGGDALEARQIDGFDQLQ YVAPGVTFNSGVNARQSATTIRGIGTGLFNIGIEGSVAIAVDGVIMGREGAGIFDFADVERVEVLRGPQGTLFGKNASAG VISVVTKKPTEGFTAEMNLGYGSYDEVNAYGAISGPIVDGVTARLSAYSNTRDGYIKNVNPNSPQGRVNERNEQGVRGKV NFALSDTSDLLLSADYVTRDQAAGALTYRQASAGGPGTGLLGFGVPAIRNQSAALGIVPGPDNLSIGSEVPFSSEMDAWG LSAEYSRSLGNFEFVSLTSHREWNSVDNNDSDLTPLPILEINSGDLGQNQFSQEFRLVSPRDKAFTYTLGAYYFTQDIDQ NNIQAGTAGLNLLGALPAGARVGTRLESEFSETNYAVFGQGEYAVTDKLSLIGGLRVLNSEVEGSQEKFAAAGAVAPFAG QVVSNGVQSASDEDTALVWRLGAQYFVNDDTNLFATVTRGYKSAGIVQGLTINPVSGTTLPTVEAEIPTQFEAGIRRSSV DRRLVTNFTGFYGQIEDFQAQTLVPGPSGTSIFTVANAGKAETYGFESEITALPTENLTLSAAIAYTNATFDEFTGAPCY QLQTPAQGCSGTPASQDLSGKRLPNSPEWVVNALARYDFDLTAQNAAFVQLGAQYRSDTMSGLANDPNTVIDAYTLLDMQ VGVNFWDDRATFTVFGRNLTDENFAEAIVAMPFDTGGYAQFVTLEAQRTWGAKLSLRY >Mature_778_residues MHAKHRTFVTASALTIAIAAFAPLVQAQEETPDDDNRRLGTITVTAQRVEQNIQQVPISVTAIGGDALEARQIDGFDQLQ YVAPGVTFNSGVNARQSATTIRGIGTGLFNIGIEGSVAIAVDGVIMGREGAGIFDFADVERVEVLRGPQGTLFGKNASAG VISVVTKKPTEGFTAEMNLGYGSYDEVNAYGAISGPIVDGVTARLSAYSNTRDGYIKNVNPNSPQGRVNERNEQGVRGKV NFALSDTSDLLLSADYVTRDQAAGALTYRQASAGGPGTGLLGFGVPAIRNQSAALGIVPGPDNLSIGSEVPFSSEMDAWG LSAEYSRSLGNFEFVSLTSHREWNSVDNNDSDLTPLPILEINSGDLGQNQFSQEFRLVSPRDKAFTYTLGAYYFTQDIDQ NNIQAGTAGLNLLGALPAGARVGTRLESEFSETNYAVFGQGEYAVTDKLSLIGGLRVLNSEVEGSQEKFAAAGAVAPFAG QVVSNGVQSASDEDTALVWRLGAQYFVNDDTNLFATVTRGYKSAGIVQGLTINPVSGTTLPTVEAEIPTQFEAGIRRSSV DRRLVTNFTGFYGQIEDFQAQTLVPGPSGTSIFTVANAGKAETYGFESEITALPTENLTLSAAIAYTNATFDEFTGAPCY QLQTPAQGCSGTPASQDLSGKRLPNSPEWVVNALARYDFDLTAQNAAFVQLGAQYRSDTMSGLANDPNTVIDAYTLLDMQ VGVNFWDDRATFTVFGRNLTDENFAEAIVAMPFDTGGYAQFVTLEAQRTWGAKLSLRY
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=213, Percent_Identity=27.6995305164319, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 82840; Mature: 82840
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAKHRTFVTASALTIAIAAFAPLVQAQEETPDDDNRRLGTITVTAQRVEQNIQQVPISV CCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHHHHHHHHCCEEE TAIGGDALEARQIDGFDQLQYVAPGVTFNSGVNARQSATTIRGIGTGLFNIGIEGSVAIA EEECCCCCCHHHCCCCHHHHEECCCEEECCCCCCCHHHHHHEECCCCEEEECCCCEEEEE VDGVIMGREGAGIFDFADVERVEVLRGPQGTLFGKNASAGVISVVTKKPTEGFTAEMNLG EEEEEECCCCCCEEECCCCHHHHHHCCCCCCEECCCCCCCEEEEEECCCCCCCEEEEECC YGSYDEVNAYGAISGPIVDGVTARLSAYSNTRDGYIKNVNPNSPQGRVNERNEQGVRGKV CCCCCCCCCCCCCCCCHHCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEE NFALSDTSDLLLSADYVTRDQAAGALTYRQASAGGPGTGLLGFGVPAIRNQSAALGIVPG EEEECCCCCEEEEECHHCCCCCCCEEEEEECCCCCCCCCCHHCCCHHHCCCCCEEEEEEC PDNLSIGSEVPFSSEMDAWGLSAEYSRSLGNFEFVSLTSHREWNSVDNNDSDLTPLPILE CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE INSGDLGQNQFSQEFRLVSPRDKAFTYTLGAYYFTQDIDQNNIQAGTAGLNLLGALPAGA ECCCCCCCHHHHCCEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCC RVGTRLESEFSETNYAVFGQGEYAVTDKLSLIGGLRVLNSEVEGSQEKFAAAGAVAPFAG HHCCHHHHHHCCCCEEEEECCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHH QVVSNGVQSASDEDTALVWRLGAQYFVNDDTNLFATVTRGYKSAGIVQGLTINPVSGTTL HHHHHHHCCCCCCCCEEEEEECCEEEECCCCCEEEEEECCCCCCCEEECEEECCCCCCCC PTVEAEIPTQFEAGIRRSSVDRRLVTNFTGFYGQIEDFQAQTLVPGPSGTSIFTVANAGK CEEECCCCCHHHHCCHHHHCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCC AETYGFESEITALPTENLTLSAAIAYTNATFDEFTGAPCYQLQTPAQGCSGTPASQDLSG CCCCCCCCCEEECCCCCEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCC KRLPNSPEWVVNALARYDFDLTAQNAAFVQLGAQYRSDTMSGLANDPNTVIDAYTLLDMQ CCCCCCHHHHHHHHHHCCCCEECCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEEE VGVNFWDDRATFTVFGRNLTDENFAEAIVAMPFDTGGYAQFVTLEAQRTWGAKLSLRY ECCEEECCCEEEEEEECCCCCCCHHCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEC >Mature Secondary Structure MHAKHRTFVTASALTIAIAAFAPLVQAQEETPDDDNRRLGTITVTAQRVEQNIQQVPISV CCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEHHHHHHHHHHCCEEE TAIGGDALEARQIDGFDQLQYVAPGVTFNSGVNARQSATTIRGIGTGLFNIGIEGSVAIA EEECCCCCCHHHCCCCHHHHEECCCEEECCCCCCCHHHHHHEECCCCEEEECCCCEEEEE VDGVIMGREGAGIFDFADVERVEVLRGPQGTLFGKNASAGVISVVTKKPTEGFTAEMNLG EEEEEECCCCCCEEECCCCHHHHHHCCCCCCEECCCCCCCEEEEEECCCCCCCEEEEECC YGSYDEVNAYGAISGPIVDGVTARLSAYSNTRDGYIKNVNPNSPQGRVNERNEQGVRGKV CCCCCCCCCCCCCCCCHHCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEE NFALSDTSDLLLSADYVTRDQAAGALTYRQASAGGPGTGLLGFGVPAIRNQSAALGIVPG EEEECCCCCEEEEECHHCCCCCCCEEEEEECCCCCCCCCCHHCCCHHHCCCCCEEEEEEC PDNLSIGSEVPFSSEMDAWGLSAEYSRSLGNFEFVSLTSHREWNSVDNNDSDLTPLPILE CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEE INSGDLGQNQFSQEFRLVSPRDKAFTYTLGAYYFTQDIDQNNIQAGTAGLNLLGALPAGA ECCCCCCCHHHHCCEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCC RVGTRLESEFSETNYAVFGQGEYAVTDKLSLIGGLRVLNSEVEGSQEKFAAAGAVAPFAG HHCCHHHHHHCCCCEEEEECCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHH QVVSNGVQSASDEDTALVWRLGAQYFVNDDTNLFATVTRGYKSAGIVQGLTINPVSGTTL HHHHHHHCCCCCCCCEEEEEECCEEEECCCCCEEEEEECCCCCCCEEECEEECCCCCCCC PTVEAEIPTQFEAGIRRSSVDRRLVTNFTGFYGQIEDFQAQTLVPGPSGTSIFTVANAGK CEEECCCCCHHHHCCHHHHCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEECCCC AETYGFESEITALPTENLTLSAAIAYTNATFDEFTGAPCYQLQTPAQGCSGTPASQDLSG CCCCCCCCCEEECCCCCEEEEEEEEEECCCHHHHCCCCCEEECCCCCCCCCCCCCCCCCC KRLPNSPEWVVNALARYDFDLTAQNAAFVQLGAQYRSDTMSGLANDPNTVIDAYTLLDMQ CCCCCCHHHHHHHHHHCCCCEECCCCEEEEECCHHHHHHHHHCCCCCCCEEEEEEEEEEE VGVNFWDDRATFTVFGRNLTDENFAEAIVAMPFDTGGYAQFVTLEAQRTWGAKLSLRY ECCEEECCCEEEEEEECCCCCCCHHCEEEEECCCCCCCEEEEEEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]