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The map label for this gene is nirD [H]

Identifier: 114797238

GI number: 114797238

Start: 2338649

End: 2338996

Strand: Direct

Name: nirD [H]

Synonym: HNE_2235

Alternate gene names: 114797238

Gene position: 2338649-2338996 (Clockwise)

Preceding gene: 114800413

Following gene: 114797947

Centisome position: 63.12

GC content: 67.82

Gene sequence:

>348_bases
ATGAGCCACGCGCCGCTCACCGACCTCGCCGCCCTGGAGGACATCCCCCGGCCAGGTGCCCTCAGGATTATGGCTGGCGG
GATCAGGATCGCCGTTTTCCGGACCGGATCTGACACCGTGTACGGACTGGAGGACCGCTGCCCGCACAAAGGCGGTCCCC
TGTCGGACGGGATGGTTCACGGGGCCTGCGTCACCTGCCCGCTGCACAACTGGACCATTTCCCTGGAAACCGGCCGGGCG
CAGGGCGCCGACGCCGGCCGTGTACGCACCTTCCGGACAGAGATCCGGGACGGCCGCGTCCTGATTGACCTGACCGAACT
TGTCCCACCCCTGAACGCAACCCGCTGA

Upstream 100 bases:

>100_bases
CCCAGAAAAAGGCGCAGATCGATCCCTGGGCGGAGCGGGTCGCCGGACTCGAAAGACAGGAATTTGTATCCCTGACGCCC
CAACTGCCAGGAGGGGTGTC

Downstream 100 bases:

>100_bases
GGAGCATTCCACACATGGCCTATCTGGCACCCACTGATTTCGTCACCAAGATGATCGACGCCGGCGAAGCGAAGATCTTC
ATGTCGACCCGCGACACCCT

Product: nitrite reductase [NAD(P)H] small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSHAPLTDLAALEDIPRPGALRIMAGGIRIAVFRTGSDTVYGLEDRCPHKGGPLSDGMVHGACVTCPLHNWTISLETGRA
QGADAGRVRTFRTEIRDGRVLIDLTELVPPLNATR

Sequences:

>Translated_115_residues
MSHAPLTDLAALEDIPRPGALRIMAGGIRIAVFRTGSDTVYGLEDRCPHKGGPLSDGMVHGACVTCPLHNWTISLETGRA
QGADAGRVRTFRTEIRDGRVLIDLTELVPPLNATR
>Mature_114_residues
SHAPLTDLAALEDIPRPGALRIMAGGIRIAVFRTGSDTVYGLEDRCPHKGGPLSDGMVHGACVTCPLHNWTISLETGRAQ
GADAGRVRTFRTEIRDGRVLIDLTELVPPLNATR

Specific function: Required for nitrite assimilation. Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017941 [H]

Pfam domain/function: PF00355 Rieske [H]

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12342; Mature: 12211

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHAPLTDLAALEDIPRPGALRIMAGGIRIAVFRTGSDTVYGLEDRCPHKGGPLSDGMVH
CCCCCCCHHHHHHCCCCCCEEEEEECCEEEEEEECCCCEEEECCCCCCCCCCCCCCCEEC
GACVTCPLHNWTISLETGRAQGADAGRVRTFRTEIRDGRVLIDLTELVPPLNATR
CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCCCC
>Mature Secondary Structure 
SHAPLTDLAALEDIPRPGALRIMAGGIRIAVFRTGSDTVYGLEDRCPHKGGPLSDGMVH
CCCCCCHHHHHHCCCCCCEEEEEECCEEEEEEECCCCEEEECCCCCCCCCCCCCCCEEC
GACVTCPLHNWTISLETGRAQGADAGRVRTFRTEIRDGRVLIDLTELVPPLNATR
CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7868621; 8969502; 9384377 [H]