Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 114563525

GI number:

Start: 2802296

End: 2806780

Strand: Reverse

Name: Not Available

Synonym: Sfri_2355

Alternate gene names: NA

Gene position: NA

Preceding gene: 114563526

Following gene: 114563524

Centisome position: NA

GC content: NA

Gene sequence:

>4485_bases
ATGACGGTCAGTAATTTCAATTTTAAAGGTCATAACCGTTATATCGTTATCGTGCCTGCCAGTGCGTCAACGCCAGCTGG
ATTCCAGTTATTAACGTTTGAGCAAAACAATAATGTTAGTGAGATAATTAATGAAATCTCGCCTCATTTAGTCCGTGATC
GTAATGCATTAATTTATGCGCGCAGTCTGGTGATGAATGCGGGTGTAAATGCTAGCTTAAATCCAAGAGATATTACCCGT
AAACTGAGTGACATTATTGAGCGCAATTTACTCAGAGTGTATGGTGAAACACCCAAACAACAAATTCAGCATTCAACTGA
AACGGGCACTCTAGGCGCGAGTTCAACCAATACAAAAGCACCCAAAACCAATAAGGGCAAACAAACTTCTGCGTCAGTTC
AATCCGGGACTGTGGCGAATCATTCCCCGACGGAAGTGGCTATTGATCAGCAAGAGTGCCGCAGCGATCCCGTATCGATG
TTAAGTGGCGAAGAAATTTTACCGTTAGTCGATTTTGAGCTTAATGGCTTAATGCCGCTAACGTGGTGTCGTTTGTATCG
TTCGAGCAAAATTCTTAGCAATGTTGGTATGGGTTACGGCTGGCGACATAACTTTTGTGTGCAGCTGGATCATCAATATC
AAGCGCCAGCGAAAGTTGGGCCTAAAAAACCCGGTAAATATTGGTTTGAATTAACCGACGATGAAGGCCGAGTACATGTG
TTCGACTCGGTTAAACGAGGGCAAACCAGTATTCAACTTTCAACAGGTTGGTCGCTAGTACATCAAGCCGATGGCCGCCA
TGTATTAATAAAGCCCGATGACAGCCATTGGGCATTTATACAAAAAAACGTTGCTGGTAAACAGGTTTGGCAGCTTGAAA
CGATTAGTAATCATCAAGGCCAATACTTTCAGCTGTATTATGATCATCAAGGCCGCTTAACTCAAATAACAACAGGCCCT
AAACGTGGCGTGTTGTTATTTTACAATGCACAAAGCAATTTGTTAAAAGTCGCTTCGTACATGTTAGATAACGAAGGCAA
CAAACAAATTCATCAGAATTTGTTGGCTAGCTATCAATACGATGATGATCAAGCCCTTATTGCCGCCACCGACAGCAACG
GACGAGTAGAGCGCTACAGTTATGTAAAAGTGAAGTCGGCTACAAATGCCTCTGACCGCGATGTCCCATACAACAACAGA
ACCTCGACCTATTTATTACAACGCAGAACTCGGGCATCAGGCTTTAGTCATCACTTTTTGTGGGACGGACAAGACCAGCG
CGCTAAATGTATTGAGCAATGGGGTGACGATGATATTTATCATTATCACTTTGAATATACGGCACTCGTTAACGGTATAA
AAAGCAGTTGTACTGACTCTTTAGGTCATCGCGAGACTTTTATTCACAATGCGCAAGGGCTATTGACAGAGCATCACAAC
CCCAATGGCAGTGTGATACGTCATCAATATGATGCCGTCGGTCGTAAAGTGGCTACCGTTGATGCGTGTGATAATAAAAT
ACAATACAACTATAACGAGCAAGGGCAGTTACTGGCTGTTATTCAAGCGGATGGTGGTACCACAAGGTTTGAATATAATC
GCTTAGGCCAACGAATTGTGACCATAGATGCGATAGGCCGAACGGCTAAAAGACATTACGATGCCACAGGTCGGTTGTTG
TCTGAAAGTGGTTTTGATGGCCGTCAAAGTCAATTTCAATACAATGATGCTGGGAAGTTAACTCAAAAAGTCGATGTTAA
TGGGGTCATTCATCGTTACCATTGGGACCGCGATGGCGAATTGCTGGCAACGCAAGTCGGTGATGCGTTAACCCGTTTTA
GCCATGACAGACTGGGACGAGTTAACGCCACTATTAATCCGCAAGGTCTGGTCACTGAATTTATTCGTGACAACAAAGGC
CAAATAGTCGAAAGTAAATCCTATCCACAAGATCATCAAGACAAGCCTGAAGAAGCCATTAGTCATTATTATCAGTACGA
TGATGCCGGACGTATTATTCGCCAGCGTCAACAAGCTGATGTTGTTGGTGAGCAAGAACTCCGTAACGATAGTGAGTACA
TTGAAAACATTATCGACTATGACGGTTTAGCCCAACCGCGCCAACAAACATTTGCCGATGGTAGTTGGCTGAAGTTTTTT
TATGATAAAGAACGTAACTTAAACCGCATTGAGCGAAGTGACGGGGCGCAGTACCGTATTGAATACACAGCAACAGAGCA
ACCTAAAACCTTAATTGGTTTTGATGGCCGTGAACAACATTATCAATATGACGCCAATGATAATTTAGTGGCAGTGAACG
ACAGTGATATTCGGTTTGTTGAGCTAAAACGTGATTCAATGGGGCGCATTTATCAGCAAAGTAGCCATGTAAAACTTGAG
CCCAGTGCCACATCTGCATTACTGAATACTCAGAACTTTTATCAATATAACCCGATAGGGCAAATAACTCGCGCCCACAA
CCAACACCGTACAGTGCAACAACACCTTGACGCTCAAGGGCGTATAAATAGTGTATTGCAAAGCCAGTGGCAACTTGACT
ATCAATATAATGATTCAGGTAAACGCAGTCGTTTAACGTTACCTGATGGGCAACAGATTGATTATCAATACAATAAAAAC
AGTCAATTAAGTGGCATTAGTCTTAAAGACAATAGCTCATCGAAGCAGCGCATACCGCTGGCTCAATATCACTATCTGCC
ATCGGGTTTATTGCATAAAACGATACAGGGTAATCAGCTTGAACTCACTCATGCTTATGACAGCCATTCAAGATTAATTG
AGCAGGCATGGCGACATGCTCGCTCAGATAACGCAGCATCAGAGCTTATATTAGAAGAGCTTTCCTCATCAGAGTCAGTT
CTGTTTGTATCAAGACGTTATCAATACGATAAACAACATCAATTACTTCGTTGTGATAGCAACATTGCAGAGCAGGGCGC
AACTAGTGAGGTTCAAACCTCCCAAGGGCCTGAAACCAAAAGCGCGCCCGATGTTAAGCAATTTCGCTATAACAACATCA
GCCAACTAGTCAGTGACAGTTATACTCGTGTAACGGATAACCCTACTGGCAACAAAACCAGTGTTCAGCAACAATACCAA
TGGGATGGATTTGGTAATCCTACTCATTCTCTTCGTGTTGACAATAACAGTGCTGATGCCAGTATTATCAGCTCAACAGC
TGACTTAGAGCGTGCAGAACACATTCAACAGCCAGCGTCATCGGCTTTGTCATCCGACACAGCAAGGCCCAATAAAAACC
TTAATGATGTGGTGGTTAACAACGACCGCTTAATGAGCATGGCTGGGGTCGATTACCGTTACGACGCCAGTGGCAACCAA
ATCAGCCAAGTGGGTACGGGCGATAAACAACAGCGTAGCTTTAATGGCTTAAACCAACTGGTGCAAATCAACGTTAATGG
CAAGCTGACGCAATACGAATATGATGCCCTAGGCCGTCGCAGTGCAAAAATCACCGAACTCGGTCGCACCGACTTCATTT
GGGACAATCATCAGCTTATTGGCGAATGCACTTTAGGTGAATACACCTGGTATATTTATCAGCCTGATACTTTTACACCT
GTAGCACTCATTAAAGCAGGGCAAGTATATTATTATCACCTAGACCAACTCGGCACACCCATTTGCTTAACCGATGAAAA
CGTTCAAATCGTCTGGCGCAGCCAACAAGACGTGTTCGGCCAGACAATTGAAAGTACATCTATTAAAAATACAGATATTG
AATATACAGATTTTAAAGATGCAGCCAAGCAAGACAAGATAACTAACCCAATCCGTTTTCAAGGGCAATACTTTGATGAC
GAATCAGGGTTACACTACAACCGCTTTAGGTACTACAGCCCTGGGCAAGCTAGATTTATACATCAAGACCCGATAGGATT
AGTGGGCGGGATAAACCATTATCAATATGCGCCTAACCATGTGAACTGGGTGGATCCGTTTGGGCTGAGTTGTAAAGAAA
ATGGTTGGAATACGTTCCAAAAAAACTCTAAAGGGATCTTTTCATCTGTTACGCAGGCTTCCCAAGGTTATAAATTTTGG
AAAGCGCAAAATTGGCCTGAGCTAGAGGATTTACTTGGGCCAGGTTCTTGGCCCCCAAACAGAGGCTTTGTGAGTATAGA
AACTGTAGATTTAAATATTGGGAGCAAAATTGATCGGTTCGGTGGTTTTTTAGATTCAAATGGTGAATTTCGCGATTATG
GTACATTCGTTTCTCCTGAAGGTAACTCATTTACTAGTAGGGCTTTACCTTCTTCGACAAAAAATAAAGACTATAATGCT
TATGAAGTTATTGAACCGCTAAAAGTAAATTCTGGTCCTGCTATTCCTTGGTTTGGTCAGCCTGGAGGGGGTACACAATA
TGAGTTACCAAGTTCAATTGAAAATTTGAAAGATAAGGGAAAAATTAAGGAAAAACGGCCATCTAACAATAAGGATGATT
TATAA

Upstream 100 bases:

>100_bases
ACAACAAAATGCTACTGGAACAAGCTTACAGCTAGAAGTATCTCAACAACTTCACCTTGGTTTGGCAATGTACTCATGGA
TAGAGAAGGCATAAACGAAC

Downstream 100 bases:

>100_bases
ATGATATATACATATTCTGGTAGCAGGCTGCGCTCTATTTTTTTGGGGAGTGAAAATGAACTATTAGAAACGAAGTTCCA
TGTGAAATGTCCAAAGTGTA

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1494_residues
MTVSNFNFKGHNRYIVIVPASASTPAGFQLLTFEQNNNVSEIINEISPHLVRDRNALIYARSLVMNAGVNASLNPRDITR
KLSDIIERNLLRVYGETPKQQIQHSTETGTLGASSTNTKAPKTNKGKQTSASVQSGTVANHSPTEVAIDQQECRSDPVSM
LSGEEILPLVDFELNGLMPLTWCRLYRSSKILSNVGMGYGWRHNFCVQLDHQYQAPAKVGPKKPGKYWFELTDDEGRVHV
FDSVKRGQTSIQLSTGWSLVHQADGRHVLIKPDDSHWAFIQKNVAGKQVWQLETISNHQGQYFQLYYDHQGRLTQITTGP
KRGVLLFYNAQSNLLKVASYMLDNEGNKQIHQNLLASYQYDDDQALIAATDSNGRVERYSYVKVKSATNASDRDVPYNNR
TSTYLLQRRTRASGFSHHFLWDGQDQRAKCIEQWGDDDIYHYHFEYTALVNGIKSSCTDSLGHRETFIHNAQGLLTEHHN
PNGSVIRHQYDAVGRKVATVDACDNKIQYNYNEQGQLLAVIQADGGTTRFEYNRLGQRIVTIDAIGRTAKRHYDATGRLL
SESGFDGRQSQFQYNDAGKLTQKVDVNGVIHRYHWDRDGELLATQVGDALTRFSHDRLGRVNATINPQGLVTEFIRDNKG
QIVESKSYPQDHQDKPEEAISHYYQYDDAGRIIRQRQQADVVGEQELRNDSEYIENIIDYDGLAQPRQQTFADGSWLKFF
YDKERNLNRIERSDGAQYRIEYTATEQPKTLIGFDGREQHYQYDANDNLVAVNDSDIRFVELKRDSMGRIYQQSSHVKLE
PSATSALLNTQNFYQYNPIGQITRAHNQHRTVQQHLDAQGRINSVLQSQWQLDYQYNDSGKRSRLTLPDGQQIDYQYNKN
SQLSGISLKDNSSSKQRIPLAQYHYLPSGLLHKTIQGNQLELTHAYDSHSRLIEQAWRHARSDNAASELILEELSSSESV
LFVSRRYQYDKQHQLLRCDSNIAEQGATSEVQTSQGPETKSAPDVKQFRYNNISQLVSDSYTRVTDNPTGNKTSVQQQYQ
WDGFGNPTHSLRVDNNSADASIISSTADLERAEHIQQPASSALSSDTARPNKNLNDVVVNNDRLMSMAGVDYRYDASGNQ
ISQVGTGDKQQRSFNGLNQLVQINVNGKLTQYEYDALGRRSAKITELGRTDFIWDNHQLIGECTLGEYTWYIYQPDTFTP
VALIKAGQVYYYHLDQLGTPICLTDENVQIVWRSQQDVFGQTIESTSIKNTDIEYTDFKDAAKQDKITNPIRFQGQYFDD
ESGLHYNRFRYYSPGQARFIHQDPIGLVGGINHYQYAPNHVNWVDPFGLSCKENGWNTFQKNSKGIFSSVTQASQGYKFW
KAQNWPELEDLLGPGSWPPNRGFVSIETVDLNIGSKIDRFGGFLDSNGEFRDYGTFVSPEGNSFTSRALPSSTKNKDYNA
YEVIEPLKVNSGPAIPWFGQPGGGTQYELPSSIENLKDKGKIKEKRPSNNKDDL

Sequences:
NA

Specific function: NA

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA