| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114563525
GI number:
Start: 2802296
End: 2806780
Strand: Reverse
Name: Not Available
Synonym: Sfri_2355
Alternate gene names: NA
Gene position: NA
Preceding gene: 114563526
Following gene: 114563524
Centisome position: NA
GC content: NA
Gene sequence:
>4485_bases ATGACGGTCAGTAATTTCAATTTTAAAGGTCATAACCGTTATATCGTTATCGTGCCTGCCAGTGCGTCAACGCCAGCTGG ATTCCAGTTATTAACGTTTGAGCAAAACAATAATGTTAGTGAGATAATTAATGAAATCTCGCCTCATTTAGTCCGTGATC GTAATGCATTAATTTATGCGCGCAGTCTGGTGATGAATGCGGGTGTAAATGCTAGCTTAAATCCAAGAGATATTACCCGT AAACTGAGTGACATTATTGAGCGCAATTTACTCAGAGTGTATGGTGAAACACCCAAACAACAAATTCAGCATTCAACTGA AACGGGCACTCTAGGCGCGAGTTCAACCAATACAAAAGCACCCAAAACCAATAAGGGCAAACAAACTTCTGCGTCAGTTC AATCCGGGACTGTGGCGAATCATTCCCCGACGGAAGTGGCTATTGATCAGCAAGAGTGCCGCAGCGATCCCGTATCGATG TTAAGTGGCGAAGAAATTTTACCGTTAGTCGATTTTGAGCTTAATGGCTTAATGCCGCTAACGTGGTGTCGTTTGTATCG TTCGAGCAAAATTCTTAGCAATGTTGGTATGGGTTACGGCTGGCGACATAACTTTTGTGTGCAGCTGGATCATCAATATC AAGCGCCAGCGAAAGTTGGGCCTAAAAAACCCGGTAAATATTGGTTTGAATTAACCGACGATGAAGGCCGAGTACATGTG TTCGACTCGGTTAAACGAGGGCAAACCAGTATTCAACTTTCAACAGGTTGGTCGCTAGTACATCAAGCCGATGGCCGCCA TGTATTAATAAAGCCCGATGACAGCCATTGGGCATTTATACAAAAAAACGTTGCTGGTAAACAGGTTTGGCAGCTTGAAA CGATTAGTAATCATCAAGGCCAATACTTTCAGCTGTATTATGATCATCAAGGCCGCTTAACTCAAATAACAACAGGCCCT AAACGTGGCGTGTTGTTATTTTACAATGCACAAAGCAATTTGTTAAAAGTCGCTTCGTACATGTTAGATAACGAAGGCAA CAAACAAATTCATCAGAATTTGTTGGCTAGCTATCAATACGATGATGATCAAGCCCTTATTGCCGCCACCGACAGCAACG GACGAGTAGAGCGCTACAGTTATGTAAAAGTGAAGTCGGCTACAAATGCCTCTGACCGCGATGTCCCATACAACAACAGA ACCTCGACCTATTTATTACAACGCAGAACTCGGGCATCAGGCTTTAGTCATCACTTTTTGTGGGACGGACAAGACCAGCG CGCTAAATGTATTGAGCAATGGGGTGACGATGATATTTATCATTATCACTTTGAATATACGGCACTCGTTAACGGTATAA AAAGCAGTTGTACTGACTCTTTAGGTCATCGCGAGACTTTTATTCACAATGCGCAAGGGCTATTGACAGAGCATCACAAC CCCAATGGCAGTGTGATACGTCATCAATATGATGCCGTCGGTCGTAAAGTGGCTACCGTTGATGCGTGTGATAATAAAAT ACAATACAACTATAACGAGCAAGGGCAGTTACTGGCTGTTATTCAAGCGGATGGTGGTACCACAAGGTTTGAATATAATC GCTTAGGCCAACGAATTGTGACCATAGATGCGATAGGCCGAACGGCTAAAAGACATTACGATGCCACAGGTCGGTTGTTG TCTGAAAGTGGTTTTGATGGCCGTCAAAGTCAATTTCAATACAATGATGCTGGGAAGTTAACTCAAAAAGTCGATGTTAA TGGGGTCATTCATCGTTACCATTGGGACCGCGATGGCGAATTGCTGGCAACGCAAGTCGGTGATGCGTTAACCCGTTTTA GCCATGACAGACTGGGACGAGTTAACGCCACTATTAATCCGCAAGGTCTGGTCACTGAATTTATTCGTGACAACAAAGGC CAAATAGTCGAAAGTAAATCCTATCCACAAGATCATCAAGACAAGCCTGAAGAAGCCATTAGTCATTATTATCAGTACGA TGATGCCGGACGTATTATTCGCCAGCGTCAACAAGCTGATGTTGTTGGTGAGCAAGAACTCCGTAACGATAGTGAGTACA TTGAAAACATTATCGACTATGACGGTTTAGCCCAACCGCGCCAACAAACATTTGCCGATGGTAGTTGGCTGAAGTTTTTT TATGATAAAGAACGTAACTTAAACCGCATTGAGCGAAGTGACGGGGCGCAGTACCGTATTGAATACACAGCAACAGAGCA ACCTAAAACCTTAATTGGTTTTGATGGCCGTGAACAACATTATCAATATGACGCCAATGATAATTTAGTGGCAGTGAACG ACAGTGATATTCGGTTTGTTGAGCTAAAACGTGATTCAATGGGGCGCATTTATCAGCAAAGTAGCCATGTAAAACTTGAG CCCAGTGCCACATCTGCATTACTGAATACTCAGAACTTTTATCAATATAACCCGATAGGGCAAATAACTCGCGCCCACAA CCAACACCGTACAGTGCAACAACACCTTGACGCTCAAGGGCGTATAAATAGTGTATTGCAAAGCCAGTGGCAACTTGACT ATCAATATAATGATTCAGGTAAACGCAGTCGTTTAACGTTACCTGATGGGCAACAGATTGATTATCAATACAATAAAAAC AGTCAATTAAGTGGCATTAGTCTTAAAGACAATAGCTCATCGAAGCAGCGCATACCGCTGGCTCAATATCACTATCTGCC ATCGGGTTTATTGCATAAAACGATACAGGGTAATCAGCTTGAACTCACTCATGCTTATGACAGCCATTCAAGATTAATTG AGCAGGCATGGCGACATGCTCGCTCAGATAACGCAGCATCAGAGCTTATATTAGAAGAGCTTTCCTCATCAGAGTCAGTT CTGTTTGTATCAAGACGTTATCAATACGATAAACAACATCAATTACTTCGTTGTGATAGCAACATTGCAGAGCAGGGCGC AACTAGTGAGGTTCAAACCTCCCAAGGGCCTGAAACCAAAAGCGCGCCCGATGTTAAGCAATTTCGCTATAACAACATCA GCCAACTAGTCAGTGACAGTTATACTCGTGTAACGGATAACCCTACTGGCAACAAAACCAGTGTTCAGCAACAATACCAA TGGGATGGATTTGGTAATCCTACTCATTCTCTTCGTGTTGACAATAACAGTGCTGATGCCAGTATTATCAGCTCAACAGC TGACTTAGAGCGTGCAGAACACATTCAACAGCCAGCGTCATCGGCTTTGTCATCCGACACAGCAAGGCCCAATAAAAACC TTAATGATGTGGTGGTTAACAACGACCGCTTAATGAGCATGGCTGGGGTCGATTACCGTTACGACGCCAGTGGCAACCAA ATCAGCCAAGTGGGTACGGGCGATAAACAACAGCGTAGCTTTAATGGCTTAAACCAACTGGTGCAAATCAACGTTAATGG CAAGCTGACGCAATACGAATATGATGCCCTAGGCCGTCGCAGTGCAAAAATCACCGAACTCGGTCGCACCGACTTCATTT GGGACAATCATCAGCTTATTGGCGAATGCACTTTAGGTGAATACACCTGGTATATTTATCAGCCTGATACTTTTACACCT GTAGCACTCATTAAAGCAGGGCAAGTATATTATTATCACCTAGACCAACTCGGCACACCCATTTGCTTAACCGATGAAAA CGTTCAAATCGTCTGGCGCAGCCAACAAGACGTGTTCGGCCAGACAATTGAAAGTACATCTATTAAAAATACAGATATTG AATATACAGATTTTAAAGATGCAGCCAAGCAAGACAAGATAACTAACCCAATCCGTTTTCAAGGGCAATACTTTGATGAC GAATCAGGGTTACACTACAACCGCTTTAGGTACTACAGCCCTGGGCAAGCTAGATTTATACATCAAGACCCGATAGGATT AGTGGGCGGGATAAACCATTATCAATATGCGCCTAACCATGTGAACTGGGTGGATCCGTTTGGGCTGAGTTGTAAAGAAA ATGGTTGGAATACGTTCCAAAAAAACTCTAAAGGGATCTTTTCATCTGTTACGCAGGCTTCCCAAGGTTATAAATTTTGG AAAGCGCAAAATTGGCCTGAGCTAGAGGATTTACTTGGGCCAGGTTCTTGGCCCCCAAACAGAGGCTTTGTGAGTATAGA AACTGTAGATTTAAATATTGGGAGCAAAATTGATCGGTTCGGTGGTTTTTTAGATTCAAATGGTGAATTTCGCGATTATG GTACATTCGTTTCTCCTGAAGGTAACTCATTTACTAGTAGGGCTTTACCTTCTTCGACAAAAAATAAAGACTATAATGCT TATGAAGTTATTGAACCGCTAAAAGTAAATTCTGGTCCTGCTATTCCTTGGTTTGGTCAGCCTGGAGGGGGTACACAATA TGAGTTACCAAGTTCAATTGAAAATTTGAAAGATAAGGGAAAAATTAAGGAAAAACGGCCATCTAACAATAAGGATGATT TATAA
Upstream 100 bases:
>100_bases ACAACAAAATGCTACTGGAACAAGCTTACAGCTAGAAGTATCTCAACAACTTCACCTTGGTTTGGCAATGTACTCATGGA TAGAGAAGGCATAAACGAAC
Downstream 100 bases:
>100_bases ATGATATATACATATTCTGGTAGCAGGCTGCGCTCTATTTTTTTGGGGAGTGAAAATGAACTATTAGAAACGAAGTTCCA TGTGAAATGTCCAAAGTGTA
Product: YD repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>1494_residues MTVSNFNFKGHNRYIVIVPASASTPAGFQLLTFEQNNNVSEIINEISPHLVRDRNALIYARSLVMNAGVNASLNPRDITR KLSDIIERNLLRVYGETPKQQIQHSTETGTLGASSTNTKAPKTNKGKQTSASVQSGTVANHSPTEVAIDQQECRSDPVSM LSGEEILPLVDFELNGLMPLTWCRLYRSSKILSNVGMGYGWRHNFCVQLDHQYQAPAKVGPKKPGKYWFELTDDEGRVHV FDSVKRGQTSIQLSTGWSLVHQADGRHVLIKPDDSHWAFIQKNVAGKQVWQLETISNHQGQYFQLYYDHQGRLTQITTGP KRGVLLFYNAQSNLLKVASYMLDNEGNKQIHQNLLASYQYDDDQALIAATDSNGRVERYSYVKVKSATNASDRDVPYNNR TSTYLLQRRTRASGFSHHFLWDGQDQRAKCIEQWGDDDIYHYHFEYTALVNGIKSSCTDSLGHRETFIHNAQGLLTEHHN PNGSVIRHQYDAVGRKVATVDACDNKIQYNYNEQGQLLAVIQADGGTTRFEYNRLGQRIVTIDAIGRTAKRHYDATGRLL SESGFDGRQSQFQYNDAGKLTQKVDVNGVIHRYHWDRDGELLATQVGDALTRFSHDRLGRVNATINPQGLVTEFIRDNKG QIVESKSYPQDHQDKPEEAISHYYQYDDAGRIIRQRQQADVVGEQELRNDSEYIENIIDYDGLAQPRQQTFADGSWLKFF YDKERNLNRIERSDGAQYRIEYTATEQPKTLIGFDGREQHYQYDANDNLVAVNDSDIRFVELKRDSMGRIYQQSSHVKLE PSATSALLNTQNFYQYNPIGQITRAHNQHRTVQQHLDAQGRINSVLQSQWQLDYQYNDSGKRSRLTLPDGQQIDYQYNKN SQLSGISLKDNSSSKQRIPLAQYHYLPSGLLHKTIQGNQLELTHAYDSHSRLIEQAWRHARSDNAASELILEELSSSESV LFVSRRYQYDKQHQLLRCDSNIAEQGATSEVQTSQGPETKSAPDVKQFRYNNISQLVSDSYTRVTDNPTGNKTSVQQQYQ WDGFGNPTHSLRVDNNSADASIISSTADLERAEHIQQPASSALSSDTARPNKNLNDVVVNNDRLMSMAGVDYRYDASGNQ ISQVGTGDKQQRSFNGLNQLVQINVNGKLTQYEYDALGRRSAKITELGRTDFIWDNHQLIGECTLGEYTWYIYQPDTFTP VALIKAGQVYYYHLDQLGTPICLTDENVQIVWRSQQDVFGQTIESTSIKNTDIEYTDFKDAAKQDKITNPIRFQGQYFDD ESGLHYNRFRYYSPGQARFIHQDPIGLVGGINHYQYAPNHVNWVDPFGLSCKENGWNTFQKNSKGIFSSVTQASQGYKFW KAQNWPELEDLLGPGSWPPNRGFVSIETVDLNIGSKIDRFGGFLDSNGEFRDYGTFVSPEGNSFTSRALPSSTKNKDYNA YEVIEPLKVNSGPAIPWFGQPGGGTQYELPSSIENLKDKGKIKEKRPSNNKDDL
Sequences:
NA
Specific function: NA
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA