Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114562624

GI number:

Start: 1727270

End: 1731145

Strand: Direct

Name: Not Available

Synonym: Sfri_1447

Alternate gene names: NA

Gene position: NA

Preceding gene: 114562623

Following gene: 114562627

Centisome position: NA

GC content: NA

Gene sequence:

>3876_bases
TTGAATTCGGACCTTCACCCGCTATCTAAGGCGTATCTCAATCTTTGTTATCAAACCGATGCTGCTAAAATTCGTCGTCG
TTTGTATCGTGTCAATAAAGAAGCCGAGTCTGAAAAAAAATCCCAAACGTTAGCTCAGTTAACTGAAGCTGCGCAGCAAG
CCTATCAAAAAGCGCAACAGCGCTTGCAGTCTAGACCTATTATCAGTTATCCAGATGAACTGCCTGTGTCGCAAAAACGT
GACGATATAGCCTCTGCTATTGCCAATAATCAAGTGGTGATTGTGGCGGGGGAGACTGGGTCTGGTAAAACCACTCAGTT
ACCTAAAATCTGTCTTGAATTGGGATTAGGAACGAGAGGCTTAATTGGCCATACTCAGCCTCGTCGTCTTGCTGCTCGAA
GTGTTGCGAACCGTATTGCTGATGAACTTAACAGCCCATTAGGCGAAGTTGTTGGCTTTAAAGTTCGTTTTGCTGATGCC
ATGAGCGACAACAGTTACATTAAACTGATGACCGACGGTATTTTGCTCGCCGAACTCACCTCAGATCGATTTCTCAACCA
GTATGATGCGATTATTATTGATGAAGCGCATGAGCGCAGCTTAAACATTGATTTTATATTGGGATATCTGAAGCAGGTAT
TAAAGAAACGTCCTGATTTAAAAGTTATTATTACTTCAGCTACCATTGATGTAGATCGCTTTTCAAAACACTTTAATAAC
GCACCTGTTATTGAAGTGTCTGGGCGTACTTTTGAAGTTGAAACGCGTTATCGTCCTTTAGTTCGCGACACTGATGCTGA
TTTAGATGTCAGCGATGGTATTTTTGCTGCCGTAGAAGAGTTAATGGCCGCTGGCCCTGGCGACATATTGATATTTATGA
ATGGTGAGCGCGAAATTCGCGATACCGCAGATTTACTCAATAAACAGCAATATCGCGATACTGAAGTTTTACCACTATAC
GCGCGTCTTTCTTATGGTGAACAATCTAAAGTCTTTAAAAGCCACATTGGCCGCCGTATCGTATTAGCCACCAACGTTGC
CGAAACGTCATTAACCGTACCTGGGATCCGTTATGTTATCGATCCTGGTACTGCTCGAATAAGCCGTTATAGTTACCGCA
CGAAAGTACAACGTTTACCGATAGAACCTATTTCGCAAGCCAGTGCCAATCAGCGTCAAGGACGTTGTGGTCGTGTAGGA
CCGGGTATTTGTATTCGACTTTACGATGAAATGGATTTTATTCAGCGTCCCGAATTTACCGATCCTGAAATATTACGAAC
CAATCTTGCTTCAGTGATATTACACATGCTCGCGATTGGATTAGGTGACATTGGCGGATTTCCATTTATTCAACCACCGG
ACCAAAAGCACATTCGTGACGGTTTTTTATTGCTTGAAGAGTTACAAGCGGTTAAAAAATCGGGACATGATCTAGTGTTA
ACGCCATTAGGCAAAGACTTAGCCAAAATCCCACTCGATCCGCGCTTGGCCCGAATGGTCATTGAAGCGAATAAATTGGG
TTGTTTACACGAAGCGTTAGTGATAACTGCAGGTTTGTCGATTCAAGATCCGCGTGAACGTCCAGCGGAAAAGAAACAAG
CAGCAGACGAGTGTCATCGCCGTTATGCTGATAAAGATTCAGACTTTGCCAGCTGGGTAAAGTTATGGGATCACGTAAAA
GATCAAAAGCATGAGCTATCAGCCAGTCAGTTTAGAAAACAATGTCGTGACGAATATCTCGCGTATTTACGCGTACGTGA
ATGGCAAGATTTATACACTCAAGTGAAACAAGCCGTCCATGAATTGAAATGGCGTATTAATGACAGTGCAGCCAGTTACG
AACAGTTACATAGAGCATTATTATCAGGCTTGTTAAGTCATGTTGGTTTTAAAGGCGAGAACAACGAGTATCTAGGGGCG
CGTAACCGTAAATTCTTTGTGTTTCCGGGATCGCCTTTAGCGAAAAAGGGGCCTAAGTGGATAATGGCTGCTGAGCTGAC
TGAAACCTCACGTTTATTTGCGCGTTGTTGTGCCAAAATAGACCCTGAATGGTTAGAGTCACTCGCCTCACATTTAGTGA
AAAAGAATTATCTAGAACCGCATTTTGAAGCCAAAGCGGCAAGCGTTATAGCACTTGAGAACCAAGTTCTTTATGGCTTG
ACCATAGTCAATCGCCGTCGAGTACAATATGGGCCGATTGACCCTATAGAAGCTCGAGATATTTTTGTGCGTAGTGCTTT
AGCCGAAGGGCAGTTACAAACGAAAGAAACGTTTTTTGTTAATAACCAAAAATTGCTTAATGACATAGAGTCGCTAGAAC
ATAAATCTCGCCGGCGAGATATTTTGGTCGATGAGCAAGTGTTGGTGGATTTTTACGAACCGCTAATACCAGCTGGCATT
TATAATGGACCACTATTTTTTGCTTGGTGGAAAAAAGCGCGTCAACAAACGCCTGACTTACTCGATTACAGCCAAGCATT
ATTAATGCAGCGTAGTGCCGATCATATATCAGCGCTCGATTTTCCAGAAATATGGCATAAAGGTAATCTCGGCTTAACCG
TCAGTTATCATTTTGAACCGGGTAGTGTTGATGACGGCGTATCTGTGCATATTCCTGTTGCACTGATTAATCAAATTGAT
GACAGTGACTTTGATTGGTTAGTGCCTGGGTTGCGACAAGAAAAACTGATTGCACTGATTAAATCCTTGCCTAAAAATCT
ACGTCGTAATTTCGTTCCCGCACCAGATTATGCTCGGGCATGCTATCAAGCGATGAAGCCGTTTGAGTTATCGATGCTTG
ATACCATGTGTAAACAGTTACTGCGCATGAGCGGTGTACGCATTTCTGCTGATGATTTTGATGTAACTCAACTGACAGAA
CATCTTAAGATGAACTTTAAGATTGAGGATGACCATGGTCGCTTAGTCGCCCAAGGTCGTGATTTAGAGCTGTTAAAAGG
TCAACTGCAAGGTGTTGTTGCTAAAGCAATACGTAAAGTGGCAGACAAAGGCATTGAGCAAGAGGCAATAACCACATGGT
CATTTGGCGATTTACCCGCTCAATATCAGCAGCGCAAAGGTAATTACGAAGTTAAAGCGTATCCGGCATTAATTGATAAT
AAAACCGATGTGGCGATTAAGTTATTTGATGATGAACATGAAGCAAAACGTCATCATCGAGTAGGGTTGCGCCGATTACT
GTTGATTAACATACCTTCGCCAGTGAAACATTTACAACAAGCTTTGCCTAATAAAGCAAAGCTAGCGATGTACTTTAATC
CATTTGGACAAGTGCAGATATTAATTGAAGATATTATTAATGCAGCGGTACAGCAGTTGTTAGATCAAAAGCAACTAGAT
ATTCGTAACGAGCAGCAGTTCGAACAAGCAAAAGAGTGGGTTCGCCAAGAGCTCAACCCAACAGCAGAGAATATTGCGCT
AAATGTAGAACAAATTTTGACAATTTATCAACGTATTAAAAAACGTCTTAAAGGCAAAATTAGTTTAGATATTGCATTTG
CAATGAGTGATATTCAAACTCAGCTTGATAGTCTTGTTTATAAAGGATTTGTCGAAGACTGTGGCTGGCAACGGTTAACG
GATGTTGTTCGTTATTTAAAAGCCATTGAAAATAGACTCGATAAGCTACCTGTTGACCCTACACGCGATCGATTACACAT
GCATAGTATTGCAAAAGTACAAGAGGCGTTAACGGCTCAGTTAGCGAAAGTGCCACGTTCACAACCGGTCCCAGAAGCAC
TAATTGAAGCTCGCTGGATGATAGAAGAGTACCGAGTATCTTGTTTTGCTCAGGTATTAGGTACCGCTTATCCTATTTCA
GAAAAGCGAGTATTGAGTTCTATCAGTCAAGTGTAA

Upstream 100 bases:

>100_bases
AGTGTTACTTATCTCCAGCTTAACAATCGTTAAAATCAATACCATTCTGCTGTTTTCCTTGCTAGGATCGCTTTTTTTGA
TGTAAGCAAGGGAATCAGAT

Downstream 100 bases:

>100_bases
CCTTGGCACGTTGCTCTATCGCATGACGATGTTAATACAACCGATATCACTTAGGTGATGTCGGTTTTTTATTATCCTAA
ATTGATTCATTTTCTACTGA

Product: ATP-dependent helicase HrpA

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1291_residues
MNSDLHPLSKAYLNLCYQTDAAKIRRRLYRVNKEAESEKKSQTLAQLTEAAQQAYQKAQQRLQSRPIISYPDELPVSQKR
DDIASAIANNQVVIVAGETGSGKTTQLPKICLELGLGTRGLIGHTQPRRLAARSVANRIADELNSPLGEVVGFKVRFADA
MSDNSYIKLMTDGILLAELTSDRFLNQYDAIIIDEAHERSLNIDFILGYLKQVLKKRPDLKVIITSATIDVDRFSKHFNN
APVIEVSGRTFEVETRYRPLVRDTDADLDVSDGIFAAVEELMAAGPGDILIFMNGEREIRDTADLLNKQQYRDTEVLPLY
ARLSYGEQSKVFKSHIGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVG
PGICIRLYDEMDFIQRPEFTDPEILRTNLASVILHMLAIGLGDIGGFPFIQPPDQKHIRDGFLLLEELQAVKKSGHDLVL
TPLGKDLAKIPLDPRLARMVIEANKLGCLHEALVITAGLSIQDPRERPAEKKQAADECHRRYADKDSDFASWVKLWDHVK
DQKHELSASQFRKQCRDEYLAYLRVREWQDLYTQVKQAVHELKWRINDSAASYEQLHRALLSGLLSHVGFKGENNEYLGA
RNRKFFVFPGSPLAKKGPKWIMAAELTETSRLFARCCAKIDPEWLESLASHLVKKNYLEPHFEAKAASVIALENQVLYGL
TIVNRRRVQYGPIDPIEARDIFVRSALAEGQLQTKETFFVNNQKLLNDIESLEHKSRRRDILVDEQVLVDFYEPLIPAGI
YNGPLFFAWWKKARQQTPDLLDYSQALLMQRSADHISALDFPEIWHKGNLGLTVSYHFEPGSVDDGVSVHIPVALINQID
DSDFDWLVPGLRQEKLIALIKSLPKNLRRNFVPAPDYARACYQAMKPFELSMLDTMCKQLLRMSGVRISADDFDVTQLTE
HLKMNFKIEDDHGRLVAQGRDLELLKGQLQGVVAKAIRKVADKGIEQEAITTWSFGDLPAQYQQRKGNYEVKAYPALIDN
KTDVAIKLFDDEHEAKRHHRVGLRRLLLINIPSPVKHLQQALPNKAKLAMYFNPFGQVQILIEDIINAAVQQLLDQKQLD
IRNEQQFEQAKEWVRQELNPTAENIALNVEQILTIYQRIKKRLKGKISLDIAFAMSDIQTQLDSLVYKGFVEDCGWQRLT
DVVRYLKAIENRLDKLPVDPTRDRLHMHSIAKVQEALTAQLAKVPRSQPVPEALIEARWMIEEYRVSCFAQVLGTAYPIS
EKRVLSSISQV

Sequences:
NA

Specific function: NA

COG id: COG1643

COG function: function code L; HrpA-like helicases

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA