Click here to switch to the map view.

The map label for this gene is sirB2 [H]

Identifier: 114331661

GI number: 114331661

Start: 1771281

End: 1771667

Strand: Reverse

Name: sirB2 [H]

Synonym: Neut_1677

Alternate gene names: 114331661

Gene position: 1771667-1771281 (Counterclockwise)

Preceding gene: 114331662

Following gene: 114331660

Centisome position: 66.58

GC content: 45.22

Gene sequence:

>387_bases
ATGGTGATTGACTATCTGGCGCTGAAATATGTGCATGTGACGAGTGTTGTGGCCAGTTACACATTATTTCTGCTGCGTGG
AATATGGATGTTGCGTATTTCACCGCTGTTGCAGCAACGTTGGGTGAAAATTGCACCGCATGTTAACGACACAATTTTAT
TGCTGAGTGCTGTAACGATGGCAGTGGTTGCGCACAGGAATCCACTTGTTGAACATTGGCTGGCGGCCAAGATTATTGGT
TTGCTAGTCTATATTGTGTTGGGTTATACAGCTTTCAGACTGGCTAAGACCCGCCGGGGAAAGGTAACTGCCTGGATCCT
GGCACAAATTGTGTTTGTCTATATCGTGTTAGTTGCTCTGACAAAAAATCCTCTCCTCCTGTTTTAA

Upstream 100 bases:

>100_bases
TCTGATTACAATGAAGCGTATGCCTGGGCCAAGGCCTGATCAGATACGGGTGGCCACATTTAAAATTGGATAGTGAAGGT
ATGGCTGATTTGGTGCAGGG

Downstream 100 bases:

>100_bases
TACCAGGTTGATGATCCTATCGTGAATCTTTGCGGAATTTTATTGAAGGATTGTCGTGAATGAATCTGTCTCAGGGCGGA
TGCAGTACGACAATCAGATA

Product: invasion gene expression up-regulator, SirB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MVIDYLALKYVHVTSVVASYTLFLLRGIWMLRISPLLQQRWVKIAPHVNDTILLLSAVTMAVVAHRNPLVEHWLAAKIIG
LLVYIVLGYTAFRLAKTRRGKVTAWILAQIVFVYIVLVALTKNPLLLF

Sequences:

>Translated_128_residues
MVIDYLALKYVHVTSVVASYTLFLLRGIWMLRISPLLQQRWVKIAPHVNDTILLLSAVTMAVVAHRNPLVEHWLAAKIIG
LLVYIVLGYTAFRLAKTRRGKVTAWILAQIVFVYIVLVALTKNPLLLF
>Mature_128_residues
MVIDYLALKYVHVTSVVASYTLFLLRGIWMLRISPLLQQRWVKIAPHVNDTILLLSAVTMAVVAHRNPLVEHWLAAKIIG
LLVYIVLGYTAFRLAKTRRGKVTAWILAQIVFVYIVLVALTKNPLLLF

Specific function: Unknown

COG id: COG3094

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787464, Length=127, Percent_Identity=35.4330708661417, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007360 [H]

Pfam domain/function: PF04247 SirB [H]

EC number: NA

Molecular weight: Translated: 14551; Mature: 14551

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIDYLALKYVHVTSVVASYTLFLLRGIWMLRISPLLQQRWVKIAPHVNDTILLLSAVTM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AVVAHRNPLVEHWLAAKIIGLLVYIVLGYTAFRLAKTRRGKVTAWILAQIVFVYIVLVAL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TKNPLLLF
CCCCEEEC
>Mature Secondary Structure
MVIDYLALKYVHVTSVVASYTLFLLRGIWMLRISPLLQQRWVKIAPHVNDTILLLSAVTM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AVVAHRNPLVEHWLAAKIIGLLVYIVLGYTAFRLAKTRRGKVTAWILAQIVFVYIVLVAL
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TKNPLLLF
CCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7543480; 8905232; 9278503 [H]