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The map label for this gene is rbfA

Identifier: 114331631

GI number: 114331631

Start: 1728456

End: 1728809

Strand: Reverse

Name: rbfA

Synonym: Neut_1645

Alternate gene names: 114331631

Gene position: 1728809-1728456 (Counterclockwise)

Preceding gene: 114331632

Following gene: 114331630

Centisome position: 64.97

GC content: 46.61

Gene sequence:

>354_bases
ATGCCGAAGGATTTTTCCCGTACCTTACGAGTGGCTGACCAGGTTCAGCGTGAATTGGCTTCGTTGATCCAGAATGAAAT
AATGGATCCGCGAATCGGGATGATAACGTTAACCGGGGTGGAGGTGACGCGGGATTATACTTATGCCAAGGTTTTCTATA
CTACGCTGGGAGGTAATGAAAATGCTCAGCTTGCGGAGGAAGGATTGAAGCGGGCCGCAGGATTTCTGCGCAGTCAGCTG
GCTGGTAAAATCAGGTTGAGAATTATTCCGAAGTTACAATTTGTTTATGATGAATCTATCGAGCGCGGAATAAAACTCTC
CAGATTGATCGATGAGGCTGTAGGTAAAACCTGA

Upstream 100 bases:

>100_bases
GATCAGATTGAAGTGTATGAGATCGTTGAAACCGCCCGTGTATTGTGATGCTGTACATCAGGCGCGATGAATAACTCGCC
TGATTGAAGAGGAGGTAATC

Downstream 100 bases:

>100_bases
TCCTGATTGGTGATATCTACAGAATTGGCGTTTTATGCGATATGGCGATATAACCTAGAATTACATTTAGCTAGCTAAAA
TTTTTTGGTCAAACTCTTAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MPKDFSRTLRVADQVQRELASLIQNEIMDPRIGMITLTGVEVTRDYTYAKVFYTTLGGNENAQLAEEGLKRAAGFLRSQL
AGKIRLRIIPKLQFVYDESIERGIKLSRLIDEAVGKT

Sequences:

>Translated_117_residues
MPKDFSRTLRVADQVQRELASLIQNEIMDPRIGMITLTGVEVTRDYTYAKVFYTTLGGNENAQLAEEGLKRAAGFLRSQL
AGKIRLRIIPKLQFVYDESIERGIKLSRLIDEAVGKT
>Mature_116_residues
PKDFSRTLRVADQVQRELASLIQNEIMDPRIGMITLTGVEVTRDYTYAKVFYTTLGGNENAQLAEEGLKRAAGFLRSQLA
GKIRLRIIPKLQFVYDESIERGIKLSRLIDEAVGKT

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=117, Percent_Identity=46.1538461538462, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_NITEC (Q0AFJ4)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_747853.1
- ProteinModelPortal:   Q0AFJ4
- SMR:   Q0AFJ4
- STRING:   Q0AFJ4
- GeneID:   4273747
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_1645
- NMPDR:   fig|335283.3.peg.1509
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   Q0AFJ4
- ProtClustDB:   PRK00521
- BioCyc:   NEUT335283:NEUT_1645-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13218; Mature: 13086

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKDFSRTLRVADQVQRELASLIQNEIMDPRIGMITLTGVEVTRDYTYAKVFYTTLGGNE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEHHCCCHHHHHEEEECCCCC
NAQLAEEGLKRAAGFLRSQLAGKIRLRIIPKLQFVYDESIERGIKLSRLIDEAVGKT
CHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PKDFSRTLRVADQVQRELASLIQNEIMDPRIGMITLTGVEVTRDYTYAKVFYTTLGGNE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEHHCCCHHHHHEEEECCCCC
NAQLAEEGLKRAAGFLRSQLAGKIRLRIIPKLQFVYDESIERGIKLSRLIDEAVGKT
CHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA