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The map label for this gene is cycA [H]

Identifier: 114331571

GI number: 114331571

Start: 1665545

End: 1666156

Strand: Direct

Name: cycA [H]

Synonym: Neut_1584

Alternate gene names: 114331571

Gene position: 1665545-1666156 (Clockwise)

Preceding gene: 114331570

Following gene: 114331572

Centisome position: 62.59

GC content: 48.69

Gene sequence:

>612_bases
ATGGCCGATAATGATGACCATCGCGCCCAAGTCCGTGAAAACATTGACCCCAAAGAAATCATTCGCCCAATTCCGATGAC
GACAACATTAGTCACGTTGGGAATGGTTATTTTCGGTGTGGTATATTTATTTATGTCAGAACCACTGACGACGTCTCGCT
ATGGTGATCAGCGCACATTGGCCGATCTTTCCAGACCACTGCAAACAGCCGATAGTGATAATACGGTTATCGATGGCAAG
ACCTTGTACGCTGCACAATGTGCAGCTTGCCATCAAGTCACAGGACTGGGTGTACCAGGCGTTTTCCCGCCACTGGACAA
CTCAGAATGGGTACAGGGTGAACCACGTATTCTAGCCAATATCCTGTTACATGGTGTTAGTGGTGAAATAGAAATCGCTG
GACAAAAATACCAGGGTTTAATGCCAGCCTTCTCGCAATTAAGTGACGCGGAGCTGGCTAGGGTGGCAACTTACATCCGC
AGCGCCTGGAGTAATAAAGCAGATGCAGTTTCAGCCGATCTGTTCGAGACAGAACGGCAATCCAGTGCTGGACGCACTAC
ACCATTTGAAGGTGGGGCGGCACTGAAGGCACTAAGTGAAAAGAATCACTAG

Upstream 100 bases:

>100_bases
CCGGATCCACAAAACGCAGGTAAAAAGGATCGCTAAATGACATCAATAAATTGCTCTGCCACATACAGGCATGATCTTTT
CAACCAAAGAGGTACACTCC

Downstream 100 bases:

>100_bases
TAGTAAGCTGCCAAGGGCGCACCTGCACTAATAACCAGAGATGATACGCACTGTAATTACAAGTGTATTAATCATTTTGC
TCGGCTGGAGTGCAGCATCC

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MADNDDHRAQVRENIDPKEIIRPIPMTTTLVTLGMVIFGVVYLFMSEPLTTSRYGDQRTLADLSRPLQTADSDNTVIDGK
TLYAAQCAACHQVTGLGVPGVFPPLDNSEWVQGEPRILANILLHGVSGEIEIAGQKYQGLMPAFSQLSDAELARVATYIR
SAWSNKADAVSADLFETERQSSAGRTTPFEGGAALKALSEKNH

Sequences:

>Translated_203_residues
MADNDDHRAQVRENIDPKEIIRPIPMTTTLVTLGMVIFGVVYLFMSEPLTTSRYGDQRTLADLSRPLQTADSDNTVIDGK
TLYAAQCAACHQVTGLGVPGVFPPLDNSEWVQGEPRILANILLHGVSGEIEIAGQKYQGLMPAFSQLSDAELARVATYIR
SAWSNKADAVSADLFETERQSSAGRTTPFEGGAALKALSEKNH
>Mature_202_residues
ADNDDHRAQVRENIDPKEIIRPIPMTTTLVTLGMVIFGVVYLFMSEPLTTSRYGDQRTLADLSRPLQTADSDNTVIDGKT
LYAAQCAACHQVTGLGVPGVFPPLDNSEWVQGEPRILANILLHGVSGEIEIAGQKYQGLMPAFSQLSDAELARVATYIRS
AWSNKADAVSADLFETERQSSAGRTTPFEGGAALKALSEKNH

Specific function: This monoheme basic protein appears to function as an electron donor to cytochrome oxidase in T.thermophilus [H]

COG id: COG2010

COG function: function code C; Cytochrome c, mono- and diheme variants

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22020; Mature: 21889

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADNDDHRAQVRENIDPKEIIRPIPMTTTLVTLGMVIFGVVYLFMSEPLTTSRYGDQRTL
CCCCHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ADLSRPLQTADSDNTVIDGKTLYAAQCAACHQVTGLGVPGVFPPLDNSEWVQGEPRILAN
HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
ILLHGVSGEIEIAGQKYQGLMPAFSQLSDAELARVATYIRSAWSNKADAVSADLFETERQ
HHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SSAGRTTPFEGGAALKALSEKNH
HCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
ADNDDHRAQVRENIDPKEIIRPIPMTTTLVTLGMVIFGVVYLFMSEPLTTSRYGDQRTL
CCCHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ADLSRPLQTADSDNTVIDGKTLYAAQCAACHQVTGLGVPGVFPPLDNSEWVQGEPRILAN
HHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
ILLHGVSGEIEIAGQKYQGLMPAFSQLSDAELARVATYIRSAWSNKADAVSADLFETERQ
HHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SSAGRTTPFEGGAALKALSEKNH
HCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2986626; 11152119 [H]