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The map label for this gene is qseB [H]

Identifier: 114331551

GI number: 114331551

Start: 1639420

End: 1640091

Strand: Direct

Name: qseB [H]

Synonym: Neut_1564

Alternate gene names: 114331551

Gene position: 1639420-1640091 (Clockwise)

Preceding gene: 114331550

Following gene: 114331552

Centisome position: 61.61

GC content: 53.72

Gene sequence:

>672_bases
ATGCGTATTCTGGTTGTCGAGGATGATTCCCTGGTGGCAAGCGGTATCAAACAGGGTTTGATCAATGCGGGCTACACTGT
CGATGTGGCGAACACAGCCGGGAGTGCGGAGATCCATCTGCGGGATGAGAATTTTGATCTGGTGGTAGTGGATATCGGCC
TGCCAGATATGGATGGATTAATGCTGGTACAACGACTACGCAACCGGCAGATGCGCCTGCCTGTATTAGTACTAACTGCG
CGCGGTAGCATGGAGGATACGATTGCCGGTCTGGATGTGGGGGCAGATGATTATATGGTCAAGCCATTCCGTTTACCAGA
GCTGGCGGCGCGTATCCGTGCACTGATTCGCCGCGCTCACTCGGTTGCCAGTACCGAGTTACGGCATGATCAGCTGATTC
TCAATACCGGTAGCCACACCGCCACGCTGCACGGCCAGCCACTATTCTTGACCATGCGTGAATGGACTATCCTGGAAATT
CTGTTGATGGCTTCACCCAAAGTAGTTAGCAAAGACAAGCTGCTGCAAAGCCTGGCCGGTTGGGACAAGAACATCACGCC
CAATGCCATTGAAGTTCATGTATCGCGGCTACGCGCCAAGATTGCGCTTGGCGGCATTGGGATTCGCACAGTTCGCGGCA
TCGGTTACCGTATTGATCAGAGCCTCTCATGA

Upstream 100 bases:

>100_bases
GGTACTGCTGCCACTAATGTTCAACCGGCTGGCACGGCCAAAACACATGAAATCCTGAATAAATCCGGTTTATGTATCAT
GAGATGGGTTGGAGGACATA

Downstream 100 bases:

>100_bases
AATCCGGTCATTCTCATCCACCGGGGTTGCGGCAACGATTGCTGCTCTGGATATTGCTCCCTTTGATTGTAGTATTTACT
GGCAGTATCCTGTTTGATTA

Product: two component transcriptional regulator, winged helix family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGLMLVQRLRNRQMRLPVLVLTA
RGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAHSVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEI
LLMASPKVVSKDKLLQSLAGWDKNITPNAIEVHVSRLRAKIALGGIGIRTVRGIGYRIDQSLS

Sequences:

>Translated_223_residues
MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGLMLVQRLRNRQMRLPVLVLTA
RGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAHSVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEI
LLMASPKVVSKDKLLQSLAGWDKNITPNAIEVHVSRLRAKIALGGIGIRTVRGIGYRIDQSLS
>Mature_223_residues
MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGLMLVQRLRNRQMRLPVLVLTA
RGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAHSVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEI
LLMASPKVVSKDKLLQSLAGWDKNITPNAIEVHVSRLRAKIALGGIGIRTVRGIGYRIDQSLS

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=43.8914027149321, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790552, Length=216, Percent_Identity=45.3703703703704, Blast_Score=182, Evalue=1e-47,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=39.9082568807339, Blast_Score=143, Evalue=7e-36,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=36.6071428571429, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=35.6164383561644, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=35.1351351351351, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=34.2222222222222, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=39.4736842105263, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=33.0316742081448, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1787229, Length=210, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1788394, Length=221, Percent_Identity=31.2217194570136, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=31.2775330396476, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=30.3030303030303, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788550, Length=138, Percent_Identity=32.6086956521739, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790437, Length=121, Percent_Identity=34.7107438016529, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790299, Length=130, Percent_Identity=30, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI145693140, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI48994928, Length=233, Percent_Identity=27.8969957081545, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24532; Mature: 24532

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGL
CEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCEEEEECCCCCCHHH
MLVQRLRNRQMRLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAH
HHHHHHHCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
SVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG
HHHHHHHCCCEEEEECCCCEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHC
WDKNITPNAIEVHVSRLRAKIALGGIGIRTVRGIGYRIDQSLS
CCCCCCCCHHHHHHHHHHHHHEECCCCCEEHHCCCEEECCCCC
>Mature Secondary Structure
MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGL
CEEEEEECCHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEECCCCCEEEEECCCCCCHHH
MLVQRLRNRQMRLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAH
HHHHHHHCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHH
SVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG
HHHHHHHCCCEEEEECCCCEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHC
WDKNITPNAIEVHVSRLRAKIALGGIGIRTVRGIGYRIDQSLS
CCCCCCCCHHHHHHHHHHHHHEECCCCCEEHHCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]