| Definition | Nitrosomonas eutropha C91, complete genome. |
|---|---|
| Accession | NC_008344 |
| Length | 2,661,057 |
Click here to switch to the map view.
The map label for this gene is gdhII [H]
Identifier: 114331492
GI number: 114331492
Start: 1574903
End: 1575643
Strand: Reverse
Name: gdhII [H]
Synonym: Neut_1504
Alternate gene names: 114331492
Gene position: 1575643-1574903 (Counterclockwise)
Preceding gene: 114331494
Following gene: 114331480
Centisome position: 59.21
GC content: 47.64
Gene sequence:
>741_bases GTGAAAGATAAAATAATTCTGGTGACGGGAGGGGCGCGGCGGGTGGGGGCTGCTATCTGTAGACGATTACATCGCGAGGG TGCCAAGCTTGTAGTTCATTATCGCAATTCATCAGCTGACGCACAACGGTTGAAACAGGAGCTTGAACAGGAGCGCCCGG ATTCGGTTGCATTACTGCAGGGTGATTTACTGGATATCGACGGAATTCCAACATTGATTGATCGGACTGTTTCACAATTT GGCGGGTTGGATACTCTGGTTAACAATGCCTCCAGCTTCTTTCCAACTCCTGTTGGGGAATGTACTGAACAGGACTGGGA TGATTTGATTGGCAGTAATCTGAAAGCTCCACTTTTTTTATCCCAGGCAGCGGCCCCCCATTTAAAAAAAAATCAGGGGA ATATCGTCAATATTGTTGATATTCATGCTGACCAACCCCTCAAACGTTATGTTATTTACAATACTGCCAAAGGTGGGCTG GCAGCATTAACTCGTTCACTGGCCATGGAGCTTGCACCGCAAATCCGTGTCAACGGTATTTCACCCGGGCCAATTCTATG GCCGGAAGCGGGTGAATGGCAGGATGAGGTAACACGCGCACATATTATTGATAGAACGCTACTTAAACGCATGGGGGAGC CGGATGATATCGCACGAACTGTCAGTTTTCTGATTGAAAATGCTCCTTTTATTACCGGGCAAATTATTGCCGTCGATGGC GGACGCAGCATTAACCTTTGA
Upstream 100 bases:
>100_bases CGGAAGAATTCGGCAGGGGTAGAGTCACGGTGTTTTCAGCAGTAAAAAAGTTTATAGTAGATTGTAGTGCTGAAGTGTAG CGTAAACAGAAGGAGTGTTC
Downstream 100 bases:
>100_bases TATCGTGCTAACTTTATATATTAGCCTCTCATTCGTGCTCGCCGGGATGCTGGATAGTTTGTGAAATGATCCGGTCGCAA TATGCTATTGCGAGCGCGGA
Product: pteridine reductase
Products: NA
Alternate protein names: GLCDH-II [H]
Number of amino acids: Translated: 246; Mature: 246
Protein sequence:
>246_residues MKDKIILVTGGARRVGAAICRRLHREGAKLVVHYRNSSADAQRLKQELEQERPDSVALLQGDLLDIDGIPTLIDRTVSQF GGLDTLVNNASSFFPTPVGECTEQDWDDLIGSNLKAPLFLSQAAAPHLKKNQGNIVNIVDIHADQPLKRYVIYNTAKGGL AALTRSLAMELAPQIRVNGISPGPILWPEAGEWQDEVTRAHIIDRTLLKRMGEPDDIARTVSFLIENAPFITGQIIAVDG GRSINL
Sequences:
>Translated_246_residues MKDKIILVTGGARRVGAAICRRLHREGAKLVVHYRNSSADAQRLKQELEQERPDSVALLQGDLLDIDGIPTLIDRTVSQF GGLDTLVNNASSFFPTPVGECTEQDWDDLIGSNLKAPLFLSQAAAPHLKKNQGNIVNIVDIHADQPLKRYVIYNTAKGGL AALTRSLAMELAPQIRVNGISPGPILWPEAGEWQDEVTRAHIIDRTLLKRMGEPDDIARTVSFLIENAPFITGQIIAVDG GRSINL >Mature_246_residues MKDKIILVTGGARRVGAAICRRLHREGAKLVVHYRNSSADAQRLKQELEQERPDSVALLQGDLLDIDGIPTLIDRTVSQF GGLDTLVNNASSFFPTPVGECTEQDWDDLIGSNLKAPLFLSQAAAPHLKKNQGNIVNIVDIHADQPLKRYVIYNTAKGGL AALTRSLAMELAPQIRVNGISPGPILWPEAGEWQDEVTRAHIIDRTLLKRMGEPDDIARTVSFLIENAPFITGQIIAVDG GRSINL
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=35.0194552529183, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=31.3725490196078, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=31.5175097276265, Blast_Score=111, Evalue=5e-25, Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=34.4827586206897, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=30.1158301158301, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=31.8181818181818, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=29.045643153527, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI126723191, Length=194, Percent_Identity=33.5051546391753, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=29.0983606557377, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=27.1653543307087, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=28.968253968254, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=28, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI31542939, Length=257, Percent_Identity=26.0700389105058, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=26.4248704663212, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI109715829, Length=239, Percent_Identity=26.3598326359833, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=26.2745098039216, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI302344755, Length=106, Percent_Identity=38.6792452830189, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789208, Length=188, Percent_Identity=40.4255319148936, Blast_Score=122, Evalue=3e-29, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=29.7959183673469, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.5573770491803, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=30.1587301587302, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=32.5102880658436, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1787891, Length=242, Percent_Identity=25.2066115702479, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=29.8755186721992, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=26.8595041322314, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=27.8225806451613, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=28.0487804878049, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787820, Length=184, Percent_Identity=27.7173913043478, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1787545, Length=259, Percent_Identity=27.7992277992278, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=25.7936507936508, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788891, Length=188, Percent_Identity=27.6595744680851, Blast_Score=62, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=34.0909090909091, Blast_Score=129, Evalue=2e-30, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=30.6451612903226, Blast_Score=115, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=33.201581027668, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=31.4741035856574, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17560676, Length=257, Percent_Identity=30.3501945525292, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=27.3092369477912, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17562906, Length=258, Percent_Identity=31.7829457364341, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=34.0740740740741, Blast_Score=106, Evalue=9e-24, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=32.319391634981, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=28.5171102661597, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=31.9548872180451, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=29.368029739777, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=31.2977099236641, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562904, Length=264, Percent_Identity=29.9242424242424, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=29.5454545454545, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI72000259, Length=259, Percent_Identity=27.7992277992278, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=26.953125, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17563726, Length=257, Percent_Identity=28.4046692607004, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=27.7153558052434, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=29.6747967479675, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=27.9245283018868, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.0076335877863, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17508651, Length=259, Percent_Identity=29.7297297297297, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=28.4090909090909, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=27.5590551181102, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17536651, Length=260, Percent_Identity=26.9230769230769, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71982365, Length=200, Percent_Identity=26.5, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=25.390625, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=27.3809523809524, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=30.5555555555556, Blast_Score=116, Evalue=1e-26, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=30.0813008130081, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=30.1587301587302, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=31.7460317460317, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21355319, Length=260, Percent_Identity=30, Blast_Score=100, Evalue=6e-22, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=30.6451612903226, Blast_Score=100, Evalue=8e-22, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=29.7619047619048, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=31.7460317460317, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=25.1968503937008, Blast_Score=68, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.47 [H]
Molecular weight: Translated: 26914; Mature: 26914
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDKIILVTGGARRVGAAICRRLHREGAKLVVHYRNSSADAQRLKQELEQERPDSVALLQ CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE GDLLDIDGIPTLIDRTVSQFGGLDTLVNNASSFFPTPVGECTEQDWDDLIGSNLKAPLFL CCEECCCCCHHHHHHHHHHHCCHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCHH SQAAAPHLKKNQGNIVNIVDIHADQPLKRYVIYNTAKGGLAALTRSLAMELAPQIRVNGI HHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEECCC SPGPILWPEAGEWQDEVTRAHIIDRTLLKRMGEPDDIARTVSFLIENAPFITGQIIAVDG CCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEEEEC GRSINL CCCCCC >Mature Secondary Structure MKDKIILVTGGARRVGAAICRRLHREGAKLVVHYRNSSADAQRLKQELEQERPDSVALLQ CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE GDLLDIDGIPTLIDRTVSQFGGLDTLVNNASSFFPTPVGECTEQDWDDLIGSNLKAPLFL CCEECCCCCHHHHHHHHHHHCCHHHHHHCCHHCCCCCCCHHHHHHHHHHHCCCCCCCCHH SQAAAPHLKKNQGNIVNIVDIHADQPLKRYVIYNTAKGGLAALTRSLAMELAPQIRVNGI HHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEECCC SPGPILWPEAGEWQDEVTRAHIIDRTLLKRMGEPDDIARTVSFLIENAPFITGQIIAVDG CCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEEEEC GRSINL CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA