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The map label for this gene is ytfM [C]

Identifier: 114331400

GI number: 114331400

Start: 1483879

End: 1485528

Strand: Reverse

Name: ytfM [C]

Synonym: Neut_1409

Alternate gene names: 114331400

Gene position: 1485528-1483879 (Counterclockwise)

Preceding gene: 114331404

Following gene: 114331399

Centisome position: 55.82

GC content: 51.58

Gene sequence:

>1650_bases
GTGACGATTATTGCACCATCAACTGCCAAAAAGCTGCTGGAAAAATATATTACTCCTCCGGCCAAGCCATTCAAGGATGA
AATCAGTCAGGCGGCTTATGCACGTAAAATAAAACAGGAATCCACTGAGCTGCTGGCAACAGAAGGGTACTTTACCCCTG
AAATCGAATTTAATGAACGGGAAAATAATAAGGCGTATGAATTGCGCGTTACACCTGGTCCCCGCACACGTGTCGCTGCT
GTGTCCATCGAATTTCAGGGAAATCTGGCGGCAGATGAGCCCGAACAGCATATACGGGTAGAGCAGTTGCGTGCCGGGTG
GACGCTGAAGCCAGGTAAGGTTTTTCGCAGTGCACGCTGGGAAGATGCCAAATCTGCTTTACTCTCCAACGTAGCGGACA
GAGATTATGCCACTGCTCGTATCGTTGAGAGTTATGCAAGAGTGGATCCCGATACCGCCCAGGCAACCTTGTCGATCATC
ATTGATTCCGGCCCGGCATTTCGTTATGGAGAGCTGCAGATTACTGGTCTGGAACGCTATCAACCGGATGTAATTCAAAA
CAGTATGCCTTTCCGCCCGGGTGATCCCTATCGCCGGGATCAATTGTTGGCTTTTCAGGTGGCGCTGCAGAATAGTCAGC
TATTTAATTCGGCGGCTGTTACGATCAAACCAGATCCCGCTTTGCACGAGGCTGTGCCGGTAATAGTCATATTGACTGAG
GCAAAATCCAAACACGTTGGTGCAGGCATTGGCTACAGCTCCAACAATGGCGCACGTGGTGAAATCAATTATCAAGATTA
CAATTTTTTGGGGCGTGCCTGGAATCTGGGCAGCCTGTTGCGCCTGGAACAAAAACGCCAGACATTTTCTGCAAGAGTAG
ATACTTTGCCGGATGCCAATCGTTATCGGTATTCATCCGGTGTACGCGTCGAGAAGACCGATATCAAAAACCTGAAAACC
TTTAATCAGCGTGTGGATTTTTCCAGGATACGAACCACGGCTCATTCCATTTTGAAAGTGGGCATCAATTGGCAACGCGA
GGAACGGGAACCTTCTGGCGCACCCAATACCGTGAATGAAACCCTGGCGCTGGATTCATGGTATCGCTACCACGATATTG
ACGATCCGGTAAATGTTCACAGTGGTTTTGTTTCAGAGGTGCGACTGGGTGGCGGTTCCAGCTATGTGCTGTCTGATCGG
AACTTTGTCCGCAGCTACCTCCGGCATCAGCAGTGGTTTCCTGTCGGCCGGCGGGATACATTGTATTTCCGTGCAGAAGC
TGGCTATACCCTGGCTTCATCGCGTCAGGGGATCCCGCAGGAATACCTGTTCCGCGCCGGGGGCATTCAATCTATCCGGG
GTTACGATTTTCTGAGTCTGGGCGTGCGTGAAGGAAATGCTATTGTTGGTGGACGTGTTGTGGCAACTGGAACAGCTGAA
TATGTTCACTGGTTCTCGAACGACTGGGGCGGGGCGGCATTTGTTGATGCAGGTGATGCGGCAGACAGGTGGGAAGATTT
TAAACTAGCGCTAGGTTACGGGGTGGGTGCACGCTGGCGCAGCCCGGCCGGCCCGTTTGCACTGGATCTGGCCCGGCGGC
ATGATACCGGCACATTACGGGTGCATTTCTCCATTGCAGTGGCGTTCTGA

Upstream 100 bases:

>100_bases
GTTACTCTGTTTGTTGTATTTGTCCTGCTGCGGTACCGCTTTGGCAGCTTCCGCCATTAGCAAGGATACGGAAAAGGAAA
AGAAATCGGATCCTGTTGAA

Downstream 100 bases:

>100_bases
TATGGATCATCAGATAAATAACAAAAATCCGGTATCGCAATCTTCTGTGAAATCTCCACGGCGTTTCAGAAAATGGTTTT
CGGGGATGCTGGCAGCGTTG

Product: surface antigen (D15)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 549; Mature: 548

Protein sequence:

>549_residues
MTIIAPSTAKKLLEKYITPPAKPFKDEISQAAYARKIKQESTELLATEGYFTPEIEFNERENNKAYELRVTPGPRTRVAA
VSIEFQGNLAADEPEQHIRVEQLRAGWTLKPGKVFRSARWEDAKSALLSNVADRDYATARIVESYARVDPDTAQATLSII
IDSGPAFRYGELQITGLERYQPDVIQNSMPFRPGDPYRRDQLLAFQVALQNSQLFNSAAVTIKPDPALHEAVPVIVILTE
AKSKHVGAGIGYSSNNGARGEINYQDYNFLGRAWNLGSLLRLEQKRQTFSARVDTLPDANRYRYSSGVRVEKTDIKNLKT
FNQRVDFSRIRTTAHSILKVGINWQREEREPSGAPNTVNETLALDSWYRYHDIDDPVNVHSGFVSEVRLGGGSSYVLSDR
NFVRSYLRHQQWFPVGRRDTLYFRAEAGYTLASSRQGIPQEYLFRAGGIQSIRGYDFLSLGVREGNAIVGGRVVATGTAE
YVHWFSNDWGGAAFVDAGDAADRWEDFKLALGYGVGARWRSPAGPFALDLARRHDTGTLRVHFSIAVAF

Sequences:

>Translated_549_residues
MTIIAPSTAKKLLEKYITPPAKPFKDEISQAAYARKIKQESTELLATEGYFTPEIEFNERENNKAYELRVTPGPRTRVAA
VSIEFQGNLAADEPEQHIRVEQLRAGWTLKPGKVFRSARWEDAKSALLSNVADRDYATARIVESYARVDPDTAQATLSII
IDSGPAFRYGELQITGLERYQPDVIQNSMPFRPGDPYRRDQLLAFQVALQNSQLFNSAAVTIKPDPALHEAVPVIVILTE
AKSKHVGAGIGYSSNNGARGEINYQDYNFLGRAWNLGSLLRLEQKRQTFSARVDTLPDANRYRYSSGVRVEKTDIKNLKT
FNQRVDFSRIRTTAHSILKVGINWQREEREPSGAPNTVNETLALDSWYRYHDIDDPVNVHSGFVSEVRLGGGSSYVLSDR
NFVRSYLRHQQWFPVGRRDTLYFRAEAGYTLASSRQGIPQEYLFRAGGIQSIRGYDFLSLGVREGNAIVGGRVVATGTAE
YVHWFSNDWGGAAFVDAGDAADRWEDFKLALGYGVGARWRSPAGPFALDLARRHDTGTLRVHFSIAVAF
>Mature_548_residues
TIIAPSTAKKLLEKYITPPAKPFKDEISQAAYARKIKQESTELLATEGYFTPEIEFNERENNKAYELRVTPGPRTRVAAV
SIEFQGNLAADEPEQHIRVEQLRAGWTLKPGKVFRSARWEDAKSALLSNVADRDYATARIVESYARVDPDTAQATLSIII
DSGPAFRYGELQITGLERYQPDVIQNSMPFRPGDPYRRDQLLAFQVALQNSQLFNSAAVTIKPDPALHEAVPVIVILTEA
KSKHVGAGIGYSSNNGARGEINYQDYNFLGRAWNLGSLLRLEQKRQTFSARVDTLPDANRYRYSSGVRVEKTDIKNLKTF
NQRVDFSRIRTTAHSILKVGINWQREEREPSGAPNTVNETLALDSWYRYHDIDDPVNVHSGFVSEVRLGGGSSYVLSDRN
FVRSYLRHQQWFPVGRRDTLYFRAEAGYTLASSRQGIPQEYLFRAGGIQSIRGYDFLSLGVREGNAIVGGRVVATGTAEY
VHWFSNDWGGAAFVDAGDAADRWEDFKLALGYGVGARWRSPAGPFALDLARRHDTGTLRVHFSIAVAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ytfM [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=516, Percent_Identity=23.8372093023256, Blast_Score=118, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184 [H]

Pfam domain/function: PF01103 Bac_surface_Ag [H]

EC number: NA

Molecular weight: Translated: 61556; Mature: 61424

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIIAPSTAKKLLEKYITPPAKPFKDEISQAAYARKIKQESTELLATEGYFTPEIEFNER
CEEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCEECCCEEECCC
ENNKAYELRVTPGPRTRVAAVSIEFQGNLAADEPEQHIRVEQLRAGWTLKPGKVFRSARW
CCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCC
EDAKSALLSNVADRDYATARIVESYARVDPDTAQATLSIIIDSGPAFRYGELQITGLERY
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCEEEEEEEECCCCEEECCEEEEECHHC
QPDVIQNSMPFRPGDPYRRDQLLAFQVALQNSQLFNSAAVTIKPDPALHEAVPVIVILTE
CCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHCCCCEEEEEEC
AKSKHVGAGIGYSSNNGARGEINYQDYNFLGRAWNLGSLLRLEQKRQTFSARVDTLPDAN
CCCCCCCCCCCCCCCCCCCCEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
RYRYSSGVRVEKTDIKNLKTFNQRVDFSRIRTTAHSILKVGINWQREEREPSGAPNTVNE
CEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHH
TLALDSWYRYHDIDDPVNVHSGFVSEVRLGGGSSYVLSDRNFVRSYLRHQQWFPVGRRDT
HEECCCCHHHCCCCCCCCCCCCCHHHEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCE
LYFRAEAGYTLASSRQGIPQEYLFRAGGIQSIRGYDFLSLGVREGNAIVGGRVVATGTAE
EEEEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEECCEEEEECCHH
YVHWFSNDWGGAAFVDAGDAADRWEDFKLALGYGVGARWRSPAGPFALDLARRHDTGTLR
HHHEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEHHHHCCCCCEEE
VHFSIAVAF
EEEEEEEEC
>Mature Secondary Structure 
TIIAPSTAKKLLEKYITPPAKPFKDEISQAAYARKIKQESTELLATEGYFTPEIEFNER
EEECCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCEECCCEEECCC
ENNKAYELRVTPGPRTRVAAVSIEFQGNLAADEPEQHIRVEQLRAGWTLKPGKVFRSARW
CCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCC
EDAKSALLSNVADRDYATARIVESYARVDPDTAQATLSIIIDSGPAFRYGELQITGLERY
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHCEEEEEEEECCCCEEECCEEEEECHHC
QPDVIQNSMPFRPGDPYRRDQLLAFQVALQNSQLFNSAAVTIKPDPALHEAVPVIVILTE
CCHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHCCCCEEEEEEC
AKSKHVGAGIGYSSNNGARGEINYQDYNFLGRAWNLGSLLRLEQKRQTFSARVDTLPDAN
CCCCCCCCCCCCCCCCCCCCEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
RYRYSSGVRVEKTDIKNLKTFNQRVDFSRIRTTAHSILKVGINWQREEREPSGAPNTVNE
CEEECCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCHH
TLALDSWYRYHDIDDPVNVHSGFVSEVRLGGGSSYVLSDRNFVRSYLRHQQWFPVGRRDT
HEECCCCHHHCCCCCCCCCCCCCHHHEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCCE
LYFRAEAGYTLASSRQGIPQEYLFRAGGIQSIRGYDFLSLGVREGNAIVGGRVVATGTAE
EEEEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCEEECCEEEEECCHH
YVHWFSNDWGGAAFVDAGDAADRWEDFKLALGYGVGARWRSPAGPFALDLARRHDTGTLR
HHHEECCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEHHHHCCCCCEEE
VHFSIAVAF
EEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]